Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91342g00002 ATGGATGTAGATGGTGGCAACAAGCGTGTCTTCCACCAAAAAGTGTGCTACCATTGGCAAGCTGGAAAGTGCAACAGGCATCCCTGCCCCTTTCTCCATAGCGCAACTCCCCTACCTCCACCGTTAACGCTGCCGCCGTCTCTTCCAATAATAACGCCGGCTTCTCAGGGGAATTGTGGTTATGGTGAGAGGTGCAAGTTCATTCATTCTTGGAGTTGTGGGGATGGTTTCTCTTTGCTCACTCAGCTTGAAGGCCACAGGAAGGTTGTGAGTGGAATAGCTCTGCCTTCTGCTTCTGATAAGCTTTATACTGCAAGTATAGATGAGACTCTCAGAGTTTGGGATTGCCAGTCTGGACAGGCATGCAACACGAAACTAAGTCTACAAGGTCTTGTTGGACAAGTATATGCTCTTGTTGTCAATAATGATATTCTCTTTACTGGTGCACTGGACGGGTCTATATTGACATGGAAGTTTACCGTAGTGGCGAATGTGTTTGAGCCAGCTGCATCACTTACAGGACATTTGCGTGGTGTTGTTTCATTAGTAGTTGGAGCGAACAGACTTTACGCCAGTTCAATGGATAATACTATAAGAGTATGGAACCTTGAAAATTTACAGTGTCTACAGATATTAACGGATCACACATCTATTGTGATGTGTGGGTTACTACAGAAAGTGGAAAGTTAG 690 0.4507 MDVDGGNKRVFHQKVCYHWQAGKCNRHPCPFLHSATPLPPPLTLPPSLPIITPASQGNCGYGERCKFIHSWSCGDGFSLLTQLEGHRKVVSGIALPSASDKLYTASIDETLRVWDCQSGQACNTKLSLQGLVGQVYALVVNNDILFTGALDGSILTWKFTVVANVFEPAASLTGHLRGVVSLVVGANRLYASSMDNTIRVWNLENLQCLQILTDHTSIVMCGLLQKVES 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91342g00002 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 83 124 IPR001680 GO:0005515
Stsc91342g00002 229 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 83 115 - -
Stsc91342g00002 229 ProSiteProfiles Zinc finger C3H1-type profile. 45 72 IPR000571 GO:0046872
Stsc91342g00002 229 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 205 - -
Stsc91342g00002 229 ProSitePatterns Trp-Asp (WD) repeats signature. 189 203 IPR019775 -
Stsc91342g00002 229 SMART WD40_4 121 158 IPR001680 GO:0005515
Stsc91342g00002 229 SMART WD40_4 165 202 IPR001680 GO:0005515
Stsc91342g00002 229 SMART WD40_4 76 115 IPR001680 GO:0005515
Stsc91342g00002 229 SUPERFAMILY WD40 repeat-like 66 223 IPR036322 GO:0005515
Stsc91342g00002 229 Gene3D - 6 69 - -
Stsc91342g00002 229 Gene3D - 165 224 IPR015943 GO:0005515
Stsc91342g00002 229 Pfam WD domain, G-beta repeat 168 202 IPR001680 GO:0005515
Stsc91342g00002 229 Pfam WD domain, G-beta repeat 79 115 IPR001680 GO:0005515
Stsc91342g00002 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 211 IPR001680 GO:0005515
Stsc91342g00002 229 Gene3D - 70 164 IPR015943 GO:0005515
Stsc91342g00002 229 PANTHER - 57 122 IPR044715 -
Stsc91342g00002 229 PRINTS G protein beta WD-40 repeat signature 145 159 IPR020472 -
Stsc91342g00002 229 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Stsc91342g00002 229 PRINTS G protein beta WD-40 repeat signature 102 116 IPR020472 -
Stsc91342g00002 229 ProSiteProfiles Zinc finger C3H1-type profile. 11 36 IPR000571 GO:0046872
Stsc91342g00002 229 SMART c3hfinal6 52 71 IPR000571 GO:0046872
Stsc91342g00002 229 SMART c3hfinal6 12 35 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91342g00002 Stsc-Chr91342 3960 5458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc91342g00002 WD40 0.027 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91342g00002 - - lang:109352195 286.574