Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91342g00001 ATGTTTCCGATCAATCATATTCTCAATAACGACCAACGGCCGACTAGCTCCTCCGAGAACACTGTCTCCGAGGGGGAGGTGGTGCTGGCGGCCAGCCACCCCAAGAAGAGAGCGGGCAGGAAAAAGTTCAGGGAGACGCGCCACCCTGTGTACCGCGGCGTGAGAAGGAGGAACTCCGGCAAGTGGGTTTGCGAGGTCAGGGAGCCAAACAAGAAGACCAGGATATGGCTTGGGACGTTCGCCACTGCAGAGATGGCAGCGCGTGCTCACGACGTGGCTGCCATCGCTCTCAGGGGGAGGTCTGCCTGCCTTAACTTCGCAGACTCTGCGTGGCGCCTCCCCGTGCCGGAGACTGCAGACGCCAGAGACATCCAGAAGGCTGCGGCGGAAGCTGCGGAGGCCTTCCGCCCCGTAACGGAGTTGGAAAGTGATGAAGTGAGGCGGGAGGGTGCTGCGGGGATGGAGGTGGCGTCAGAGACGACGATGGTGGCGGCAGGAGAAGAGCAAGAAGAAGAAGGAGGGTTGCCGGAGATGTGGAGGACGATGGCGTTGATGTCTCCAACACATTACTGTGTGAGTGAGTATGGCGTTGATGACGTGGAATTTGATGATGCCGAAGTGTCCCTGTGGAGTTATTCAATTTAA 645 0.586 MFPINHILNNDQRPTSSSENTVSEGEVVLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPETADARDIQKAAAEAAEAFRPVTELESDEVRREGAAGMEVASETTMVAAGEEQEEEGGLPEMWRTMALMSPTHYCVSEYGVDDVEFDDAEVSLWSYSI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91342g00001 214 MobiDBLite consensus disorder prediction 8 25 - -
Stsc91342g00001 214 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Stsc91342g00001 214 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Stsc91342g00001 214 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Stsc91342g00001 214 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Stsc91342g00001 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 212 IPR045277 GO:0003700
Stsc91342g00001 214 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Stsc91342g00001 214 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Stsc91342g00001 214 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Stsc91342g00001 214 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Stsc91342g00001 214 MobiDBLite consensus disorder prediction 1 46 - -
Stsc91342g00001 214 FunFam Ethylene-responsive transcription factor 2 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91342g00001 Stsc-Chr91342 1844 2853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91342g00001 2 212 AP2-EREBP Transcription Factor Family AT5G51990 53.275 4.14e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc91342g00001 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91342g00001 - - lang:109344916 249.21