Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91338g00002 CAAGCGGCGCTGGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGGAAGATTAGGGCACATGCACAAGCCATTAGGGCAGCATATCTTTTCAAAGCAGCTGGGGACGGTCAAGTGACTGAAACCAAAAAGCCTCCTCCGGCCTCTGCTGGAGAATTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGATACCGCTGCTCTCCAGCAATATGGAGGGGTTGCTGGGTTATCAAATTTGTTGAAAACCAATTTAGAGAAGGGAATTCATGGTGATGATGCTGACTTGCTAAAACGAAGGAATGCATTTGGTTCCAATGATTATCCTCGAAAGAAAGGAAGAAGTTTTTGGATGTTCCTGTGGGATGCTTGCAAGGATCTGACTTTGATTATTTTAATGGTAGCTGCAGCGGCTTCATTGGCATTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTCGTCATTGTTGTAACAGCTATAAGTGACTATAAGCAGTCTCTTCAGTTTCGGGACCTGAATGAAGAGAAGAGAAATATCCACTTGGAGGTTATCAGAGGTGGTAGGAGGATGGAAATCTCTATATATGAGATTGTTGTTGGTGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCGAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGACCCTTTTTTGATGTCTGGGTGTAAAGTTGCAGATGGCAGTGGTACTATGCTGGTAACTGGTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCCAGCATTTCAGAAGACACTGGTGAAGAAACACCTTTGCAGGTTCGCTTAAATGGTGTAGCCACCTTCATTGGTATTGTTGGTCTCTCTGTTGCTGTTGTTGTTCTGATTGTGCTACTTGCCAGATTTTTCTCTGGGCATACCAGAGATGCAAGTGGCAATGTTCAATTTAAAGCAGGGAAGACTAAAGTTGGTGATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACGATTGTAGTGGTTGCAGTGCCAGAAGGGCTCCCGTTAGCCGTTACCTTAACACTGGCCTACTCGATGAGGAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCTTGTGAGACAATGGGCTCTGCCACAACCATTTGTAGTGATAAGACTGGAACGTTGACCATGAATCAGATGACTGTGGTTGAGGCTTATGCTGGTGGGAAGAAGATTGATCCTCCTGGAAATAAGTCACAGCTCTCTCCGAAGCTTCACTCTCTGCTCATTGAAGGTGTTGCACAGAACACTAATGGCAGCGTTTATGTCCCTGAGGGTGGTAGCGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATAGAGATTGGGATGAACTTTGACGCAACTAGATCAGAATCATCAATTATTCACGTTTTCCCTTTCAATTCTGAGAAAAAACGAGGCGGAGTTGCAATACAAACGGCTGACTCTGAAGTTCACATTCACTGGAAAGGTGCTGCTGAGATTGTCCTAGCCTGCTGTACACAGTTTATTGATGCAAATGACCAGTTGGTGGACATGGACGAGGAGAAGATGACATCTTTCAAAAAAGCTATTGAAGACATGGCTGCTGAGAGTTTACGTTGTGTTGCCATTGCATATAGAACATTTGAAAAGGAGAATGTTCCAGCCAATGAAGAACAACGAGCTCACTGGTCTTTACCTGAAGATAATCTTGTTTTGTTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGAGTGAAAGATTCAGTGGAGCTTTGCCAAAAAGCGGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTTGAGTGTGGAATACTTAATTCCATTGCTGAAGCTACAGAGCCTACCATCATTGAAGGGAAAACTTTTCGTGCCTTGACAGATGCACAGAGGGATGAAATTGCTGAAGCAATATCAGTTATGGGACGGTCATCTCCTAATGACAAGTTATTGCTTGTGCAAGCATTGAGGAGGACGGGACATGTTGTGGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTGCATGAGGCTGATATAGGTCTTGCAATGGGTATTCAAGGAACAGAAGTTGCAAAAGAGAGCTCTGATATTATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTGAGATGGGGACGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTAGCTGCTCTTGTTATAAATGTTGTTGCTGCTGTTTCCTCTGGTGATGTCCCACTAAATGCAGTGCAGCTTTTGTGGGTAAATCTTATTATGGATACTTTGGGAGCACTAGCATTGGCAACTGAACCACCAACTGATCACCTTATGGATCGGCCTCCTGTTGGCCGAAGAGAACCCCTCATAACAAATATTATGTGGAGAAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTGTTGCTTGTTCTGAATTTCCGAGGTAGGAGCATACTGGGTCTGACACATGACGAAAATAACCATGCAATTAAAGTGAAAAACACACTGATCTTCAATGCATTTGTTCTGTCTCAAATCTTTAATGAATTCAATGCGCGAAAGCCAGATGAGTTCAACATATTCAGTGGAGTCACGAAAAACTACCTTTTCATGGGTATAGTGGGACTAACTGTTGTGCTTCAGGTTATCATCATCGAATTCCTCGGCAAGTTCACTTCAACAGTCAGGCTTAATTGGAAGCAGTGGCTCATCTCTGTTATCATTGGGTTCATAAGTTGGCCTCTTGCTGTCGTTGGGAAATTGATACCAGTTCCAGATACTCCCATCAACAACGTATTTTCAAGATTTCGCGGTCAAAGAAGGAAGGAGCCTGAGGCCTCACAATAG 3084 0.4296 QAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGDGQVTETKKPPPASAGEFPIGQEQLASISREHDTAALQQYGGVAGLSNLLKTNLEKGIHGDDADLLKRRNAFGSNDYPRKKGRSFWMFLWDACKDLTLIILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRMEISIYEIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARFFSGHTRDASGNVQFKAGKTKVGDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPGNKSQLSPKLHSLLIEGVAQNTNGSVYVPEGGSDVEVSGSPTEKAILHWGIEIGMNFDATRSESSIIHVFPFNSEKKRGGVAIQTADSEVHIHWKGAAEIVLACCTQFIDANDQLVDMDEEKMTSFKKAIEDMAAESLRCVAIAYRTFEKENVPANEEQRAHWSLPEDNLVLLAIVGLKDPCRPGVKDSVELCQKAGVKVKMVTGDNVKTAKAIAVECGILNSIAEATEPTIIEGKTFRALTDAQRDEIAEAISVMGRSSPNDKLLLVQALRRTGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLTHDENNHAIKVKNTLIFNAFVLSQIFNEFNARKPDEFNIFSGVTKNYLFMGIVGLTVVLQVIIIEFLGKFTSTVRLNWKQWLISVIIGFISWPLAVVGKLIPVPDTPINNVFSRFRGQRRKEPEASQ 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91338g00002 1027 Pfam E1-E2 ATPase 209 409 - -
Stsc91338g00002 1027 FunFam Calcium-transporting ATPase 9 plasma membrane-type 285 455 - -
Stsc91338g00002 1027 Gene3D - 139 992 - -
Stsc91338g00002 1027 FunFam Calcium-transporting ATPase 633 784 - -
Stsc91338g00002 1027 Pfam Cation transporter/ATPase, N-terminus 89 156 IPR004014 -
Stsc91338g00002 1027 SUPERFAMILY Calcium ATPase, transmembrane domain M 88 1003 IPR023298 -
Stsc91338g00002 1027 SFLD Haloacid Dehalogenase 413 791 - -
Stsc91338g00002 1027 SUPERFAMILY Calcium ATPase, transduction domain A 209 304 IPR008250 -
Stsc91338g00002 1027 PRINTS Sodium/potassium-transporting ATPase signature 550 568 - -
Stsc91338g00002 1027 PRINTS Sodium/potassium-transporting ATPase signature 174 194 - -
Stsc91338g00002 1027 PRINTS Sodium/potassium-transporting ATPase signature 424 445 - -
Stsc91338g00002 1027 SMART Cation_ATPase_N_a_2 87 161 IPR004014 -
Stsc91338g00002 1027 Gene3D - 428 784 IPR023214 -
Stsc91338g00002 1027 Gene3D - 441 639 IPR023299 GO:0000166
Stsc91338g00002 1027 Gene3D - 112 307 - -
Stsc91338g00002 1027 FunFam Calcium-transporting ATPase 186 307 - -
Stsc91338g00002 1027 Pfam Cation transporting ATPase, C-terminus 824 1001 IPR006068 -
Stsc91338g00002 1027 PRINTS P-type cation-transporting ATPase superfamily signature 763 775 - -
Stsc91338g00002 1027 PRINTS P-type cation-transporting ATPase superfamily signature 255 269 - -
Stsc91338g00002 1027 PRINTS P-type cation-transporting ATPase superfamily signature 654 664 - -
Stsc91338g00002 1027 PRINTS P-type cation-transporting ATPase superfamily signature 632 643 - -
Stsc91338g00002 1027 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Stsc91338g00002 1027 PRINTS P-type cation-transporting ATPase superfamily signature 739 758 - -
Stsc91338g00002 1027 SFLD p-type atpase 413 791 IPR044492 -
Stsc91338g00002 1027 FunFam Calcium-transporting ATPase 756 1005 - -
Stsc91338g00002 1027 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 438 636 IPR023299 GO:0000166
Stsc91338g00002 1027 PANTHER CATION TRANSPORTING ATPASE 55 1003 - -
Stsc91338g00002 1027 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Stsc91338g00002 1027 NCBIfam calcium-translocating P-type ATPase, PMCA-type 79 1003 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc91338g00002 1027 NCBIfam HAD-IC family P-type ATPase 372 454 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc91338g00002 1027 NCBIfam HAD-IC family P-type ATPase 706 819 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc91338g00002 1027 CDD P-type_ATPase_Ca_PMCA-like 113 872 - -
Stsc91338g00002 1027 FunFam Calcium-transporting ATPase 441 639 - -
Stsc91338g00002 1027 FunFam Calcium-transporting ATPase 139 196 - -
Stsc91338g00002 1027 Pfam Ca2+-ATPase N terminal autoinhibitory domain 1 23 IPR024750 GO:0005516
Stsc91338g00002 1027 Pfam haloacid dehalogenase-like hydrolase 428 753 - -
Stsc91338g00002 1027 SUPERFAMILY HAD-like 429 844 IPR036412 -
Stsc91338g00002 1027 Gene3D - 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91338g00002 Stsc-Chr91338 17341 28664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91338g00002 1 1020 Primary Pumps ATPases AT5G57110 75.660 0.0 1578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91338g00002 K01537 - gmx:100792945 1780.76