Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91323g00005 ATGATCAAGGATGCTATTGTTACGTTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTCAGAAGTTTCTCGAAGAAAAGCATAAGCAGCTTCCATCGAACTTCAGAAAGCTTCTTCTGTCTAATTTGAAGAAGCTCGTAGCTTCTGGAAAGATCGTTAAGGTTAAAGGTTCCTTCAAGCTTCCAGCTACGAAGACGCCGGCATCGTTGGCGCTCTCGCAGACAAAGAAGCCCGCAGCTGCTAAGTCCAAGCCCAAGCCTAAGCCCAAGCCCGCCGCCAAGGTTAAGGCAACAAAAGCAAAGGCAACTAAAACTAAGACTAAGACTAAATCGGTTAAATCAGTCACAGCTAAGTCTAAGCCCAAGCCCGCTCCAAAGGCCAAGACTGTAGCCAAGTCTAAAGCAGCTGCAGCAGCGAAGCCCAAGCCCAAGCCCAAGGCGGCTGCAGCCAAGCCCAAATCGAAACCCAAGGCGGCTGCTAAGCCACCGGCAAAGGCCCCGAGGATGTCGACTAGGAGTTCGCCGGGAAGGAAGGCTGCCCCAGCTGCAAAGCCTGCAGAGAAGAAGGCTGCAGCGGCGAAGGTCGTAAAGCCCAAGACCAGGAGCGTAAGGTCTCCGGCGAAGAAGGTTTCGGTGAAGAGGGGTGGAAGGAAGTGA 657 0.5282 MIKDAIVTLKEKNGSSQYAIQKFLEEKHKQLPSNFRKLLLSNLKKLVASGKIVKVKGSFKLPATKTPASLALSQTKKPAAAKSKPKPKPKPAAKVKATKAKATKTKTKTKSVKSVTAKSKPKPAPKAKTVAKSKAAAAAKPKPKPKAAAAKPKSKPKAAAKPPAKAPRMSTRSSPGRKAAPAAKPAEKKAAAAKVVKPKTRSVRSPAKKVSVKRGGRK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91323g00005 218 MobiDBLite consensus disorder prediction 201 218 - -
Stsc91323g00005 218 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 63 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc91323g00005 218 SUPERFAMILY "Winged helix" DNA-binding domain 1 67 IPR036390 -
Stsc91323g00005 218 SMART h15plus2 1 58 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc91323g00005 218 PRINTS Histone H5 signature 78 92 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc91323g00005 218 PRINTS Histone H5 signature 111 128 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc91323g00005 218 PRINTS Histone H5 signature 8 25 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc91323g00005 218 PRINTS Histone H5 signature 133 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc91323g00005 218 PANTHER HISTONE H1 1 193 - -
Stsc91323g00005 218 MobiDBLite consensus disorder prediction 64 218 - -
Stsc91323g00005 218 CDD H15 1 68 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc91323g00005 218 Pfam linker histone H1 and H5 family 1 61 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc91323g00005 218 Gene3D - 1 68 IPR036388 -
Stsc91323g00005 218 MobiDBLite consensus disorder prediction 81 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91323g00005 Stsc-Chr91323 14342 15657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91323g00005 1 69 Single Myb Histone (SMH) Gene Family AT1G49950 39.130 9.69e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91323g00005 K11275 - zju:107425932 122.864