Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91310g00002 ATGGGAACTCGACCCGAACAACCTTGTCGTGAGGAAGATGACGAGGAGATGCTGGGTCCTGGAGCAACAATTTCGAGTCAGTCGATGTCAACAAGCAGGAGTGTGGGATCACCGTCTAGCCGGAGTGAGCAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTCAGATTAAACCATCTTGACATTCACGGTGACGATGCTGGATCGCAGGGAGCAGTTGCTAGCAAGAAGAAAAAAAGAGGTCAACGTGCTGTAGGAGGTGATAAGAGTGGAAGAGGGCTCCGCCAGTTTAGCATGAAAGTTTGTGAAAAGGTGGAAAGCAAGGGGCGCACAACATACAATGAGGTAGCAGATGAGCTTGTTGCTGAATTTGCTGACCCAGGCAACAGTGTTTTAGCCCCCGATCAGCAACAATATGATGAGAAAAATATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGCCAGAGTGATATTGAAGAACTAAAGACAGAACGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCCACTTACTTGCAAGAGCTGGAAGATCAATATGTAGGTCTTCAAAACCTCATGAAACGGAATGAGCAATTATGTAGCTCAGGAAATGCTCCCAGTGGAGGTGTATCTTTGCCTTTTATTCTAGTGCAGACACGTCCGCATGCAACTGTGGAGGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGGCCTCAGAACGATAATAATGTAACGCCGAATATTACAGATGGAGGTGAAGGTTCTAGCATGTCAGGGTTGTTTCATGCGCAGGCTCCTACCGCAGCTTCAAACCCACCCGTTAGGCCTCCTTCATCACCACCACTTCCTGGAATATTAAAGGCCAGAGTTAAGCCTGAGCACTAA 1032 0.4496 MGTRPEQPCREEDDEEMLGPGATISSQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVLAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGLRNRIEKKATYLQELEDQYVGLQNLMKRNEQLCSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQNDNNVTPNITDGGEGSSMSGLFHAQAPTAASNPPVRPPSSPPLPGILKARVKPEH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91310g00002 343 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Stsc91310g00002 343 PIRSF Txn_factor_DP 6 343 IPR015648 GO:0005667|GO:0051726
Stsc91310g00002 343 MobiDBLite consensus disorder prediction 1 17 - -
Stsc91310g00002 343 MobiDBLite consensus disorder prediction 1 93 - -
Stsc91310g00002 343 PANTHER TRANSCRIPTION FACTOR DP 22 296 IPR015648 GO:0005667|GO:0051726
Stsc91310g00002 343 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Stsc91310g00002 343 MobiDBLite consensus disorder prediction 288 343 - -
Stsc91310g00002 343 Coils Coil 203 223 - -
Stsc91310g00002 343 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Stsc91310g00002 343 Gene3D Transcription factor DP 179 299 IPR038168 -
Stsc91310g00002 343 SUPERFAMILY E2F-DP heterodimerization region 180 297 IPR037241 -
Stsc91310g00002 343 MobiDBLite consensus disorder prediction 288 314 - -
Stsc91310g00002 343 MobiDBLite consensus disorder prediction 21 55 - -
Stsc91310g00002 343 CDD DP_DD 178 281 IPR014889 -
Stsc91310g00002 343 Gene3D - 85 178 IPR036388 -
Stsc91310g00002 343 SMART DP_2 180 341 IPR014889 -
Stsc91310g00002 343 FunFam Transcription factor-like protein DPB 179 304 - -
Stsc91310g00002 343 FunFam Transcription factor-like protein DPB 85 178 - -
Stsc91310g00002 343 Pfam Transcription factor DP 181 293 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91310g00002 Stsc-Chr91310 13233 16882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91310g00002 91 293 E2F-DP Transcription Factor Family AT5G02470 54.902 8.07e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc91310g00002 DP 7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91310g00002 K04683 - qsa:O6P43_019777 565.074