Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91309g00002 ATGTCGGGGCGGCGGCAAAGACGAAGCTCTACTGGAGGCTTTGAATTCACGGAGAATGAGATCACTGATCTTGCTTCAAGGTTACAAGCATTGCTCCCGCAACCTAGCCAACAAACAAGGAACTCAAGGCAGGTATCAGTGTTGGAGATCTTGAAGGAAACTTGCAGTCACATCAAGAGACTACAGAAAGATGTGGAAGACCTTAGTGAAACTCTGACAGGGCTCTTGGATTCTCTTCACATTACTGATATTGACATCACTATTTTACAAGATCTTTTGAAACAACAATAA 291 0.433 MSGRRQRRSSTGGFEFTENEITDLASRLQALLPQPSQQTRNSRQVSVLEILKETCSHIKRLQKDVEDLSETLTGLLDSLHITDIDITILQDLLKQQ 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91309g00002 96 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 61 IPR011598 GO:0046983
Stsc91309g00002 96 Pfam Helix-loop-helix DNA-binding domain 20 62 IPR011598 GO:0046983
Stsc91309g00002 96 Coils Coil 51 78 - -
Stsc91309g00002 96 PANTHER DNA BINDING PROTEIN 1 94 IPR044172 -
Stsc91309g00002 96 Gene3D - 4 73 IPR036638 GO:0046983
Stsc91309g00002 96 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91309g00002 Stsc-Chr91309 9077 10070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91309g00002 1 78 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 44.872 1.09e-14 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91309g00002 HLH 0.00029 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91309g00002 - - qsa:O6P43_022826 74.7146