LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91308g00001	ATGGACGATGATGGAGAGACGGCGGCGACGGAATCGTTATCAGAAGGCATGTATGATGTTTTTCTGAACTTCAGAGGAGAAGATACAAGGTACATCTTCACAGACCATCTCTACCATAGACTGGCAGAAATCGGAAAGCTAAAAGTGTTCAGAGATGAACCGGGTCTGGAAATGGGCGACCAAATGGATTCTACTCTGATGGAAGCCATTAAAAGATCAAGGATGTTTGTTGTTGTGATAAGTGAAAACTATGTATCTTCGTCATGGTGCCTCATGGAGCTAGAAGAGATGCTCAAGTACTCCAACAATGGAACAAAACGCCCAATTTTCCCAGTCTTTTATTACGTACTGCCAGCAGAAGTGAGACATCAGATTAGCGAGAAATCTAAGCAAGCCATGGAGGATCATGAAAGGAGAGAAGGCGTAGACAAGGTGAAAGCGTGGAAGTTGGCTCTGTCCATAGTTTGCGGGATAAGCGGACGACACATTGTTGTGAATAAAGAGTATGAAACTAAGGCCATGGAAGAGATTGCTGAAAAGGTCTTAGCAAAACATCGGGAGATGAAGCAACTATTGAATAAATTTGATTCTCAATTTGATGCGGTGGAATCACTTTTGAACCTTGAATCTCGTAATACTATTCGCATGGTGGCAATCTACGAAGAAGATGCTAAAATAGACACAACAACTTTTGCTTTTGAGCTTTACTACAAGATTAAGTATGAATTCAAATCAGCAAGTTTTCTTGGTGATGTTAGTAAACAGCTATGGGAAAACACCGCTGATGGCTTGGAAAATCTTGAAAAGGAGCTTCTTTCTGATATGGATGTGGAGGTAAGCACACAGCACAAGTTGCAGCATAGAAGAGTGCTTCTTGTTCTGGAAGGGGTTGACAGCAAAGAGCATCTGGATTTGCTATTAGTGGAACTCGGAATATGTGATCGGTTTGGTCGTGGCAGTAGGATCATCATAACAACAGAAGTCAAAGATCTCTTACATGAGATAGATGGTGTTGAGATTAGGACACATTGCATTCGTGAAGATGAGTTCCACGGAAACAGAGGAAGCTCTGCTATGATGGAAGAAAATGTAGTGGGATTGGAGAAAGATTTCCACAAAGTAATTAATCAACTCAAGGATAAAAATTCTGCAGGGAATGTGGTTTCTATTGTTGGCATGGGTGGGTTGGGGAAGACTACCCTTGCTCGAAAGGTTTACAATAGCAATGAAGCCAGAGAGTTATTTCCTTGTCGTGCCTGGGCAGACATTTCCCAAAGTCCCAGCTTGATCCAAGTTTTTAGAGAACTTCTCAAGTGTTTGAAGGTACCCAAATCTAAATATGAAGATTCAAGTGAAGAGGAGTTGAAGGAGAAAGTGAGAAATTGTTTGAATGGGAAAAAGTATTTGGTAGTCCTTGACAATGTTTGGGACACTGATAACCCCTGGGATGTTCTAAGGAATTGTTTCCCAAGAAACAAGAACGGTAGCATGATACTAGTAACTACCCGTGATGATCGAGTGGCCAACGTTTTAGAGTCAAAGAATCCTCATGTCATGCTTTCCTTTATGGATAAAGAAGAAAGTTGGGAACTGTTTCGCAACGAGGTGTTCTACAGCAAAATGTGTCCTCCGGAGCTAGAACCTATCGGTAGATCAATTGCTGAAAGTTGTAACGGTTTACCATTGCTTATCAAAACCACAGCTCGGATTGTGGCGAAGAGGGAGAGATCAGAGGAGACATGGGAAGAAATCAAGAAGCTGCTCCCTTATTGGTCTATTGCTGAGGATAAGGATGGTAAGAAGATGATGGAGAGATTGATGCTTAGCTACGATGATCTGTCTGAGGAAATGAAGCCATGTTTCTTATATCTTGGGGCGTTTCTTGAAGATGAAGAGATTTTGGTAAGAGACTTAATCTGTATGTGGATGGCAGAAGAGTTCATAAAGTCAATAATCCAATCTGGAAGATCAAAAGTAGCATCAGCGATAGAAGCTGAAGACATTGGGGAGGAATACCTAAAGGAGCTAGTGGATCGTAACTTGGTACAAGTGGCGTGTAGGAGGAGTGATGGGAAAGGCGTGAAAACAGTTAAGATTCACGGTCTCATCAGAGAACTGTGCATATCAGAGAGTAACAAGAGTAACAAAGCTTGTAGTTTGTTGTTTCCCCAGCATATGGGTTCCTATGCATGTATGGTAACACGACGTGATCAAGCAAGTACTTGTTCGTTGTTCGTTTATGGATATGTGGACTGGAGGTTTCATCCTTTTCCAGAAGACTTCTGCCAAGTTAACGTGCTATATTTGGGAGGACACAGTGGGGGTCTAATGGATGCTGAGTATTTGAACAAGTTGAAAATCATAAGGTTCTTGAAAGGGGACTGTACTGGCCTATATGGGCTATTTAAGCTTCAGGGTTTACAAACATTGAATGCACTGTCCCCTTTCATGGGGAAGAAAGAGAAAATAAGTATTGATGAGGGGTTAAAGCAAGTAAGACATATTGTTTGTCACTCTAGAATGCATTTATTAGTAGATGAAGAAGGGGTTAAAGATAAAATGCAGAATGTGCAGACCCTGCTTTATGTGTATGCGGATTCGCAGCTGGGGTTCTTACTCGACAATGGCTACTTTGCCAACTTGACAACACTGGGTTTATTGATAAGTAAAGATGAAGTTGAATTAGTAGAAGAAAACTTGAGGAGGCTGCACCGCCTAAGCAAGCTACTTAAACTGAAACTCGACTTTGAGATCCCTAAAAGAGTATCATTAGGTAAAATTGCATTTCCGTCGAATCTTACCAAGATTTCCCTGTTTTATTTTGATGGTTTGAAGTATGAAGACATGGATGCTTTGGGACGAATTCCCAAACTTACAGTTTTAAAATTATTTGGAGTAGATTGTTCCGAAAAAATCCTTCATTGTGGTAGTGCTGGGAGCTTTCTGCAGCTTCAAGTGTTTATCATGAAATTTGTGCATGTCAGACGTGTTATATTGGAACATGGTGCGATGCCTGAACTTCGACGTGCAGTCTTTCGCAACTGCCCTGGCTTGGTGTTCAAGTACCTTCCTGAACAAATGCTTTGCTTGGGTAGCAACTTGCATTTTGTAGAACACTAG	3120	0.4138	MDDDGETAATESLSEGMYDVFLNFRGEDTRYIFTDHLYHRLAEIGKLKVFRDEPGLEMGDQMDSTLMEAIKRSRMFVVVISENYVSSSWCLMELEEMLKYSNNGTKRPIFPVFYYVLPAEVRHQISEKSKQAMEDHERREGVDKVKAWKLALSIVCGISGRHIVVNKEYETKAMEEIAEKVLAKHREMKQLLNKFDSQFDAVESLLNLESRNTIRMVAIYEEDAKIDTTTFAFELYYKIKYEFKSASFLGDVSKQLWENTADGLENLEKELLSDMDVEVSTQHKLQHRRVLLVLEGVDSKEHLDLLLVELGICDRFGRGSRIIITTEVKDLLHEIDGVEIRTHCIREDEFHGNRGSSAMMEENVVGLEKDFHKVINQLKDKNSAGNVVSIVGMGGLGKTTLARKVYNSNEARELFPCRAWADISQSPSLIQVFRELLKCLKVPKSKYEDSSEEELKEKVRNCLNGKKYLVVLDNVWDTDNPWDVLRNCFPRNKNGSMILVTTRDDRVANVLESKNPHVMLSFMDKEESWELFRNEVFYSKMCPPELEPIGRSIAESCNGLPLLIKTTARIVAKRERSEETWEEIKKLLPYWSIAEDKDGKKMMERLMLSYDDLSEEMKPCFLYLGAFLEDEEILVRDLICMWMAEEFIKSIIQSGRSKVASAIEAEDIGEEYLKELVDRNLVQVACRRSDGKGVKTVKIHGLIRELCISESNKSNKACSLLFPQHMGSYACMVTRRDQASTCSLFVYGYVDWRFHPFPEDFCQVNVLYLGGHSGGLMDAEYLNKLKIIRFLKGDCTGLYGLFKLQGLQTLNALSPFMGKKEKISIDEGLKQVRHIVCHSRMHLLVDEEGVKDKMQNVQTLLYVYADSQLGFLLDNGYFANLTTLGLLISKDEVELVEENLRRLHRLSKLLKLKLDFEIPKRVSLGKIAFPSNLTKISLFYFDGLKYEDMDALGRIPKLTVLKLFGVDCSEKILHCGSAGSFLQLQVFIMKFVHVRRVILEHGAMPELRRAVFRNCPGLVFKYLPEQMLCLGSNLHFVEH	1039

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91308g00001	1039	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	229	339	IPR027417	-
	Stsc91308g00001	1039	Gene3D	-	615	709	IPR036388	-
	Stsc91308g00001	1039	Gene3D	-	11	189	IPR035897	-
	Stsc91308g00001	1039	Coils	Coil	174	194	-	-
	Stsc91308g00001	1039	Gene3D	-	523	614	IPR042197	-
	Stsc91308g00001	1039	FunFam	Probable disease resistance protein At1g61300	350	516	-	-
	Stsc91308g00001	1039	ProSiteProfiles	TIR domain profile.	16	185	IPR000157	GO:0007165
	Stsc91308g00001	1039	Pfam	NB-ARC domain	368	612	IPR002182	GO:0043531
	Stsc91308g00001	1039	Gene3D	-	352	520	IPR027417	-
	Stsc91308g00001	1039	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	335	IPR044974	GO:0006952
	Stsc91308g00001	1039	SMART	till_3	17	158	IPR000157	GO:0007165
	Stsc91308g00001	1039	FunFam	Probable disease resistance protein At1g63360	610	709	-	-
	Stsc91308g00001	1039	Pfam	TIR domain	18	190	IPR000157	GO:0007165
	Stsc91308g00001	1039	SUPERFAMILY	L domain-like	695	1024	-	-
	Stsc91308g00001	1039	PRINTS	Disease resistance protein signature	557	571	-	-
	Stsc91308g00001	1039	PRINTS	Disease resistance protein signature	462	476	-	-
	Stsc91308g00001	1039	PRINTS	Disease resistance protein signature	387	402	-	-
	Stsc91308g00001	1039	SUPERFAMILY	Toll/Interleukin receptor TIR domain	13	160	IPR035897	-
	Stsc91308g00001	1039	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	356	624	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91308g00001	Stsc-Chr91308	4750	9489	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91308g00001	18	326	WRKY Transcription Factor Family	AT4G12020	26.087	1.32e-13	73.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91308g00001	-		-	aip:110271380	968.763