Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91307g00001 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCCATTTTGAAGACAAGGATATGGCTTGGAACATTTGAAACAGCAGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACTAATTTCCCTTTCATCCCTAACAACAACAACAACAATGTCTCTCAATCTTCTTCTTCTTCAAAGCTTCTCTCAGCAACTTTGATTGCAAAATTGCACAGGTGCTACATGGCTTCTATGCAGTTATTAGCCAGGCAATCTTCTTCACAACAAGACCCTCAAAGGGTAATAGTGCCCATTAATGATAATCATAATAATAATAGCACTGATAATAATAATAACTATTCCAAAGTGATCAAAATGAGTGAAAAGGGTGATTCAATTGTGTCATCAAGAAAGAGAACACATGATGATGAGGAAGAGGTGGTGAAACAAGAAGAATCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACACTTCAAGCCACTTGAAGAAGATCACATTGACCAAATGATTGAGGAGCTTCTTCATTATGGCTCTATTGAACTTTGTTCTGTTTTTCCTTACCAACAACCTATTTAA 663 0.3967 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFIPNNNNNNVSQSSSSSKLLSATLIAKLHRCYMASMQLLARQSSSQQDPQRVIVPINDNHNNNSTDNNNNYSKVIKMSEKGDSIVSSRKRTHDDEEEVVKQEESEANWVVKKVKGMDQIGPHFKPLEEDHIDQMIEELLHYGSIELCSVFPYQQPI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91307g00001 220 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Stsc91307g00001 220 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Stsc91307g00001 220 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Stsc91307g00001 220 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Stsc91307g00001 220 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Stsc91307g00001 220 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Stsc91307g00001 220 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Stsc91307g00001 220 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 153 - -
Stsc91307g00001 220 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Stsc91307g00001 220 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91307g00001 Stsc-Chr91307 17320 18420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91307g00001 1 217 AP2-EREBP Transcription Factor Family AT5G25190 54.386 6.52e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc91307g00001 AP2 7.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91307g00001 - - aip:107605402 288.115