Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91298g00006 ATGGCCGACGATGGAGAGGCGTCGTCATCCTTATCAAAAGGCATGTGTGATGTTTTTCTGAACTTTAGAGGCCCAGACACAGGGAAAGAATTCACAGACCATCTCTACTATAGGCTGGCAAAAATCGAAAAGCTACGAGTGTTCAGAGATGTACCAGGTCTGGAACCAGGAAAGGAAATCTTACCTTCTCTCATGGATGGAATTAAAAGATCATGGATGTTTATTGTTGTCATGAGTTCAGATTACTTATCTTCCCGATCGTGCCTCGAGGAGCTAGAGGAGATACTCAAGTACTCCGATAATGGAAAAAAACGGCTTATTTACCCAATTTTTTATCACGTGAATCCTGCAGAACTGAGATATCAGAAAAGCCCCGAATCTCAGAAAGCCATGGAGGTTCATAAAAGGCATGTAGGCGTAGAAAAGGTGGAAGTGTGGAAGAAGGCTGTATTAAGAGTTTCCTGGCTAAGCGGAAAACACATCGTTAAGAATAAAGAGTATGAATCTGAGGTCATTGGAGAGATTGCTGAAAAGGTAGTCTTACCAAAACATCAGGAGATCAAGCAAGTATTGAATAAATTTGATTCTGAATTCGAAGCAGTGAAATCACGTTTGAAGCTTGAATCTCGTAATACTTTTCATATGGTGGGAATTTACGAAGAAGATGCTAAAATAGGCATAACAACTTTTGCTTTTGAGCTTTACAACAAGATCAAGAATAAGCATGGATTCCAAGAGGCAAGTTTTCTTGGTGATGTTAGTAAACAGCTATGGGAAAACACCGCTAATGGCTTGGAAAATCTTAAAAAAGAGCTTCTTTCTGATATGGGTGTGGAGGAAAGCACAAAGCAGAGGTTGCAGCATAGAAGAGTGCTTGTGGTTCTGGAAGGGGTGGATAGTAAAGAGCATTTGAAGTTGCTATTAGAGCAACAGGCAATACGTGATTTGTTTGCTCGTGACAATGGCAGTAGGATCATCATAACAACAGAAAACAAAAATCTCTTTCAGCATTCTCCAGTTATGATGAATGGTGCTCAACTTGAGACATACTGCATTCGTGAAGGTGGAATAATCGATGGAAATAGAGGAAGCTTTACTATGATGGAAGAGAAAGTAGTGGAAATGGAAAAAGACTACTCCGGTAAGGTAAAGAATAATCAACTCAAGGATGAAGGCTCTCCAGGGAATGTGGATTCTATGGTTGGCATGGGTGGGTTGGACAAGACTACCCTTGCTCCAAAGGTCTACAATAACTCTAAAGGTCTACCATCACAAGATAATGGTTTTTCAGGAAATGTGGTTTCTATGTTTAGCATGGGTGGGCGTGCTCCAATGATCGCCAATAGCTCTAAAGGTCAACCACTGGATAATGCAAACCAGAAGGGACATGTCAACTGTGGCAGCTGCAAAAGGCCACTCATGTATCCAACTGGGGCTAGATCTGTTACATGTACATTTTGCGGTCTGGTAACTTCAATCGTGAATGGTGCTCAACCTGAGACATACTGCATTCATGAGGAAAGTAAATTCGATGTAAACACAGGAAGCTTTTCTGTGAAGACTACTATTGTTGGCATGCCTGGGAGCTAG 1590 0.4138 MADDGEASSSLSKGMCDVFLNFRGPDTGKEFTDHLYYRLAKIEKLRVFRDVPGLEPGKEILPSLMDGIKRSWMFIVVMSSDYLSSRSCLEELEEILKYSDNGKKRLIYPIFYHVNPAELRYQKSPESQKAMEVHKRHVGVEKVEVWKKAVLRVSWLSGKHIVKNKEYESEVIGEIAEKVVLPKHQEIKQVLNKFDSEFEAVKSRLKLESRNTFHMVGIYEEDAKIGITTFAFELYNKIKNKHGFQEASFLGDVSKQLWENTANGLENLKKELLSDMGVEESTKQRLQHRRVLVVLEGVDSKEHLKLLLEQQAIRDLFARDNGSRIIITTENKNLFQHSPVMMNGAQLETYCIREGGIIDGNRGSFTMMEEKVVEMEKDYSGKVKNNQLKDEGSPGNVDSMVGMGGLDKTTLAPKVYNNSKGLPSQDNGFSGNVVSMFSMGGRAPMIANSSKGQPLDNANQKGHVNCGSCKRPLMYPTGARSVTCTFCGLVTSIVNGAQPETYCIHEESKFDVNTGSFSVKTTIVGMPGS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91298g00006 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 338 IPR027417 -
Stsc91298g00006 529 NCBIfam zinc finger domain, LSD1 subclass 463 491 IPR005735 -
Stsc91298g00006 529 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Stsc91298g00006 529 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 160 IPR035897 -
Stsc91298g00006 529 Coils Coil 255 275 - -
Stsc91298g00006 529 SMART till_3 15 156 IPR000157 GO:0007165
Stsc91298g00006 529 Pfam TIR domain 17 187 IPR000157 GO:0007165
Stsc91298g00006 529 Gene3D - 8 182 IPR035897 -
Stsc91298g00006 529 Pfam LSD1 zinc finger 466 488 IPR005735 -
Stsc91298g00006 529 Gene3D - 183 342 IPR027417 -
Stsc91298g00006 529 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 335 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91298g00006 Stsc-Chr91298 20807 26679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91298g00006 17 335 WRKY Transcription Factor Family AT4G12020 24.242 6.77e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc91298g00006 TIR 1.4e-25 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91298g00006 - - aip:107637424 362.073