Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91297g00006 GATGACTTTCCACAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCCGTCCCTATTTTTGTAAGGCTCCTTGCTTCTCCCAGTGACGATGTCCGTGAACAGGCAGTGTGGGCCTTAGGAAACGTTGCTGGGGATTCTCCCCGATGCCGTGATCTTGTACTCAGTCATGGTGCTCTGCTTCCTTTGTTGTCACAACTGAATGAACATGCCAAACTTTCCATGCTTAGGAATGCTACCTGGACACTCTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCCCTTGCTTGTCTTATCCATTCAAATGATGAAGAAGTCTTGACCGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTAATTGAAGCTGGTGTCTGTCCCCGGCTAGTTGAGCTTTTAACGCACCCATCCCCTTCAGTTCTAATTCCTGCTCTTCGTACAGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAATCACCGAGCTCTTCCTTGCCTTCTTAATCTGTTGTCTAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACAATATCAAACATCACAGCTGGTAATAAGCAGCAGATTCAGGCTGTAATTGAGTCTAATATAATTGGTCCTTTGGTCAGCCTGCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGGCTGCTTGGGCTATATCAAATGCTACATCTGGTGGATCTCATGAACAAATCAAGTACCTGGTAAGCCAAGGGTGTATCAAGCCCTTGTGCGATCTTCTCATCTGTCCCGATCCTAGAATTGTGACAGTTTGTCTGGAAGGACTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATATGGGCAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGATGCAGAGGGTTTGGAGAAAATCGAGAACCTCCAGAGTCATGATAACACCGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACATACTGGTTGGAGGAGGATGATGAGACTATGCCTCCAGGGGATGGTTCCCAACCAGGGTTCAACTTTGGTGGTTCCGATGGTCCTGCTGTGCCACCCGGCGGATTCAACTTTTAA 1212 0.4447 DDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALACLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLTHPSPSVLIPALRTVGNIVTGDDMQTQVIINHRALPCLLNLLSNNYKKSIKKEACWTISNITAGNKQQIQAVIESNIIGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPPGDGSQPGFNFGGSDGPAVPPGGFNF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91297g00006 403 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 32 74 IPR000225 GO:0005515
Stsc91297g00006 403 MobiDBLite consensus disorder prediction 374 403 - -
Stsc91297g00006 403 PANTHER IMPORTIN ALPHA 1 374 - -
Stsc91297g00006 403 FunFam Importin subunit alpha 1 369 - -
Stsc91297g00006 403 SMART arm_5 275 315 IPR000225 GO:0005515
Stsc91297g00006 403 SMART arm_5 106 145 IPR000225 GO:0005515
Stsc91297g00006 403 SMART arm_5 62 104 IPR000225 GO:0005515
Stsc91297g00006 403 SMART arm_5 147 187 IPR000225 GO:0005515
Stsc91297g00006 403 SMART arm_5 21 61 IPR000225 GO:0005515
Stsc91297g00006 403 SMART arm_5 232 272 IPR000225 GO:0005515
Stsc91297g00006 403 SMART arm_5 189 230 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Atypical Arm repeat 330 376 IPR032413 -
Stsc91297g00006 403 Gene3D - 1 369 IPR011989 -
Stsc91297g00006 403 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 158 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 148 186 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 117 144 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 276 313 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 232 271 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 190 230 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 21 60 IPR000225 GO:0005515
Stsc91297g00006 403 Pfam Armadillo/beta-catenin-like repeat 63 104 IPR000225 GO:0005515
Stsc91297g00006 403 SUPERFAMILY ARM repeat 2 373 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91297g00006 Stsc-Chr91297 27356 31169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91297g00006 4 285 U-box Gene Family AT3G46510 25.177 5.01e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91297g00006 K15042 - gmx:100797267 773.467