Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91297g00002 ATGGCATTGACAGCAACTGCAACCCACTCAGTTCGTGAGGACATTTTGAATGCTTTAAGAATCCCCCATGCAGTTGTTCTTGAGAGAAGCTTTGACAGACCAAACTTGAAGTATGAAGTGATTGTAAAGACAAAGGAACCGCTGAAGCAGCTGGGACAGCTACTAGTGGATCGTTTCAGGAATCAGTGTGGAATTGTTTACTGCCTCTCGAAAAGTGAATGTGTCGAGGTCTCAAAATTCTTGAATGAATCATGTCGGGTTAAAACAGCATATTACCATGCTGGCATGGCTGCCCGTCAAAGAGTTGCTGTTCAAAGGAAATGGCATGATGGAGAGGTTCATGTTGTCTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCGTCCATAATACAATGTCAAAATCAGTTGAAAGTTATTATCAAGAATCAGGAAGGGCCGGAAGGGATAATCTTCCTGCAGTTTGCATTGTATTGTACCAGAAGAAGGATTTCAGCAGACTTGTTTGCATGATAAGAAATGGTCAAGGATGTAAAAGGGAAAGCTTTAAGACAGCAATGGATCAAGCAAAAAAGATGCAACAGTACTGTGAACTAAAGGGTGAATGCCGGAGACAAACTTTACTCAAACACTTTGGAGAATCTTTTGACAGAAAAGGCTGCAAGTATGGATCTAACCCATGTGATAACTGTCTCAACACTGCACTATGA 729 0.4156 MALTATATHSVREDILNALRIPHAVVLERSFDRPNLKYEVIVKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFLNESCRVKTAYYHAGMAARQRVAVQRKWHDGEVHVVCATIAFGMGIDKPDVRFVVHNTMSKSVESYYQESGRAGRDNLPAVCIVLYQKKDFSRLVCMIRNGQGCKRESFKTAMDQAKKMQQYCELKGECRRQTLLKHFGESFDRKGCKYGSNPCDNCLNTAL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91297g00002 242 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 47 197 IPR001650 -
Stsc91297g00002 242 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 238 - -
Stsc91297g00002 242 SMART helicmild6 75 157 IPR001650 -
Stsc91297g00002 242 Pfam Helicase conserved C-terminal domain 50 156 IPR001650 -
Stsc91297g00002 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 239 IPR027417 -
Stsc91297g00002 242 CDD SF2_C_RecQ 33 166 - -
Stsc91297g00002 242 Gene3D - 33 240 IPR027417 -
Stsc91297g00002 242 Pfam RecQ zinc-binding 169 238 IPR032284 -
Stsc91297g00002 242 NCBIfam RecQ family ATP-dependent DNA helicase 1 239 IPR004589 GO:0004386|GO:0006310
Stsc91297g00002 242 FunFam ATP-dependent DNA helicase 33 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91297g00002 Stsc-Chr91297 12116 14752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91297g00002 49 155 Eukaryotic Initiation Factors Gene Family AT5G11170 30.841 5.47e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91297g00002 K10899 - aip:107615323 455.677