Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91295g00005 ATGGCAGTGGGGAATCCTCCATTGATCATCAAGCTTAAAACATCGTCCAAACGAAAGCTTGACGTGAACGAAAGGGTTGAGGTGAGGAGCCTGGAGGAAGGCTTTCTGGGTTCATGGCACCCGGGGAAAGTTGTCAAATGGGAGAGGCTGCAGCGCCATGTCAAATACGATAACATATTACTTGATGATGAGGTGAATTACCTTGTGGAAAAGGTGAATGTTCCAAAGGTGTTGGATGGCGACAGCGATTCTTCGAATTGCAATGTTCGTGGTTGGATTAGGCCGGTGCCTCCTATGAGGGAATTTGAAAATAGGGAACTTAAATATGGTCTGTGTGTTGATGTGTACCATGATGAAGCTTGGTGGGAAGGGGTTATATTTGATCATTGTGATGGAATGGAGGAGAGGAGTGTATTATTTCCGGATTTGGGTGATGAGATGAAGATTGGAGTTCATCAAATGCGGATAACTTATGATTGGGATGAGGTTACCGGGAAGTGGCGGCCACGAGGGAACTGGATTTTTCTTGAATTTATTGAGGAGTTTGAGAGGACATCGTTGGTTTCAGTTTCAGTGAAGCAAGTTTGGTATGATATAAGGGCCAAACCGGACTTTGCCAAGATTAGGGAATGGACTTTTAATGAGAAGCACTTATGGAAAGACATGGTAATGGAGGTACTTGGTGACTACTTAAATGTTACATTAGGAGAAGTTTGCTCCTTCTTAGACCTTCCAAGGAGTTTATTGAATGTAACACCAGAGAAGGAGTTAGTTGAACCTGGCGATGATGTTGAATTCAATCATGAAGTTGTTGTTGTGAACTCTGCTGGCCAATCGAGTAGCAATTGTGTCACAACTGCTCATTGTGATGGTAATCCGGATAATGCATTTAGTTCTGATGATGGGATTGCTGAACTCCCTATGGAAGAAGGTGAGTCATCAAATTTGTTGAACGCTGTTCAAGAGAGATATAGTATGGTCAAATATGTCCCTCAGAAAGAAGTTTTGGTGCAGAAAGAAAAACGTAGAAAGCTTCGCCACTCAACTTTACATTGGAAACCTCTCAGATTGTCTGAAGTTGAGTTATGTATTGATGCTGTTGAAAAATATGCACAGGTTGGTAAGAGTGCTAGTTTGGAAAAAGCTCGCAAACATCTTGAGCATCTTGGATGGGAAATTGAGTGGGCAAAGTGTAAAACACTTGACGACACCTACAGGAACAGGTACAAGTATAAGCCGCCTGATAAAGATGGTGTTTTCTACTCTCTCAGGTCGGTTTGTAAATATCTAGCACGGAACTCGGACATTAGCCCTTTTCCTTCCCAAAATGATCAGAGTATGATTCAACTTACATCTGATGATCATCTTGCACCTATTCTTATTGATCAGTCAGAAAAAAGTCAGGATCTAAACATTTTGCCTCCAGTTGAGTCGCCTCCTCTGGCTGAAGTTGCAGATGAACCTGAGTTTTGTCCTCAAGCTGTTTTAGAATATAGCTTGAATAGATCTGCAATGCGAGGGCCTGACAAGGCAACATGTATTTCCAAAGCAAGGAGGCATCTTTTGGCTGAAGGATGGAGCTATAAGTATGTAGATCCAAGTAACAGAAGAAGGGGGTTTTTGTATACGCCTCCAGACAAGGGAAGAAATATCTTTAAACTCTATGAAGCATGCCATTATTGTATTCGACAAAATGTTTCTAGATGGACCATGCTTGGAATGCAACCTTTGAGTGAACAGGATAACGTTGAGCAGATTTGGAGTGCCAGTTTATTATGGAAGGCATCCCAATGGCTTCAAGGGGAACCGATGGTACCTGCCACAGAAGTCGTAGCTTCAAGTGGATCAACCAATAATCGGAAGCGGAAACTCTTGGAAAATACAAAGCCTGGCTTATCTAAGCGCCGAAGCAATGGATTACCTCGACGGGTACTACGATCAAATGAAAGGGTGCAAAAGGTGTCTGCGCCTTCTTTGTCACACCAGAAACCTCAGAATGTACTGTCTTGGTTGATAGACAACAACATTCTTTTGCCAAGGTCTAAGGTTTCTTACAAGCGAAAAGGCAGGCTCTGTTCAGCTGAAGGGAGAATAACCAGTGATGGAATCAAGTGTAACTGTTGTCTGAAAGTATATAGTCTTTCTGGCTTCGAAAGTCATGCTAGTGGCTGTAGTACCCGCAGACCTGCTGCAAGTATCATTTTAGAAGATGGTAGATCACTATTAGATTGCCTGATAAAAACAATGGAAGATCATATGACAAGGGAAGCTAAGGCAAAACCAAAGAAAGATCTTCGTCAAGGCGAGAATGACAATATTTGTTCTGTTTGCCACTTTGGTGGTGATCTAATTTTATGCGATCAATGCCCATCTTCATTTCATGGGATATGTCTAGGATTGGAGGACGTCCCTGAAGGTGAATGGTTTTGCCCATCATGTCGATGTGCAATTTGTGGCCAAAGTAAAATAGAAGGAGCGGAGGAGGAAGATTTCCTTGTCTGCGTTCAGTGTGAACATAAATATCACGTTAGGTGCCTCAGGGTTAAAGATGCAACTAACTCTAGAAGATATAAGAAAAGCTGGTTCTGCAGAAGGGACTGTGAAAAGATATATGTAGGTCTCCATAAGCTACTAGGAGAGCCAGTTTCAGTGGGCAATAACAATCTAACTTGGACATTGGTGAAATATATAAACTTCGAGAGTAGTGATCAGTGTACTTTTAAAGGTTACTTATTGCCAGAAAGTTACAGCAAACTCAACGTTGCACTCTCAGTGATGCATGAATGTTTTGAGCCCCTAAAGGATCCTTTGTCTACCAGAGATCTCATGGAAGATGTTTTATTCAGTAGATGGTCAAAACTTAGTCGATTGAATTTCAGTGGTTTCTATACTGTACTTCTGGAGAGAAATGAAGAGCTGATAAGTGCAGCAACTATTAGGGTCTATGGAAAGAAGGTAGCGGAAGTGCCTCTTGTTGGTACCAGATTACAGTATCGTCGACATGGAATGTGCCGCATTTTGATGAATGAGCTTGAAAAGAGTCTCATGCAGCTGGGAGTGGAGAGGCTCGTTTTACCTGCTGTTCCTAGTGTTGTTGAAACATGGACTGGTTCTTTTGGCTTTGTAAAGATGACAGAGTTTGAGAGATCACAATTCTTGGACAATACCTTTTTAGATTTTCAGGGTACCGTCATGTGCCAGAAGCTGTTGATGAAGATTCCATCTCCAGATCCGGTTTTGTTAATAGAGTACCAACAAAGGACCCAAGATGTTTTTCCTGAAACTAAGTTAAATTTTGACGCGGGTTCGGTATCTGAAGTATTACACCAAGCAGAAGAAACTGACAAAGGAGAGATACAGAATTCACAAATGCAAGATACTCTTGCTAGCAGCAATGATAATGGCAGTTATGGTGTCATTGAGCAAGTAACACAGGTGAATAAACCAAGTCCTGAGGATCATCAGTGCCAGAGCTCTATTGTAACACAAGCTGACAGTGATAATAATGGCTCATCATATAAGTGCTACTACAAAAGAAGGAAATACACCAAGTCATAG 3558 0.4182 MAVGNPPLIIKLKTSSKRKLDVNERVEVRSLEEGFLGSWHPGKVVKWERLQRHVKYDNILLDDEVNYLVEKVNVPKVLDGDSDSSNCNVRGWIRPVPPMREFENRELKYGLCVDVYHDEAWWEGVIFDHCDGMEERSVLFPDLGDEMKIGVHQMRITYDWDEVTGKWRPRGNWIFLEFIEEFERTSLVSVSVKQVWYDIRAKPDFAKIREWTFNEKHLWKDMVMEVLGDYLNVTLGEVCSFLDLPRSLLNVTPEKELVEPGDDVEFNHEVVVVNSAGQSSSNCVTTAHCDGNPDNAFSSDDGIAELPMEEGESSNLLNAVQERYSMVKYVPQKEVLVQKEKRRKLRHSTLHWKPLRLSEVELCIDAVEKYAQVGKSASLEKARKHLEHLGWEIEWAKCKTLDDTYRNRYKYKPPDKDGVFYSLRSVCKYLARNSDISPFPSQNDQSMIQLTSDDHLAPILIDQSEKSQDLNILPPVESPPLAEVADEPEFCPQAVLEYSLNRSAMRGPDKATCISKARRHLLAEGWSYKYVDPSNRRRGFLYTPPDKGRNIFKLYEACHYCIRQNVSRWTMLGMQPLSEQDNVEQIWSASLLWKASQWLQGEPMVPATEVVASSGSTNNRKRKLLENTKPGLSKRRSNGLPRRVLRSNERVQKVSAPSLSHQKPQNVLSWLIDNNILLPRSKVSYKRKGRLCSAEGRITSDGIKCNCCLKVYSLSGFESHASGCSTRRPAASIILEDGRSLLDCLIKTMEDHMTREAKAKPKKDLRQGENDNICSVCHFGGDLILCDQCPSSFHGICLGLEDVPEGEWFCPSCRCAICGQSKIEGAEEEDFLVCVQCEHKYHVRCLRVKDATNSRRYKKSWFCRRDCEKIYVGLHKLLGEPVSVGNNNLTWTLVKYINFESSDQCTFKGYLLPESYSKLNVALSVMHECFEPLKDPLSTRDLMEDVLFSRWSKLSRLNFSGFYTVLLERNEELISAATIRVYGKKVAEVPLVGTRLQYRRHGMCRILMNELEKSLMQLGVERLVLPAVPSVVETWTGSFGFVKMTEFERSQFLDNTFLDFQGTVMCQKLLMKIPSPDPVLLIEYQQRTQDVFPETKLNFDAGSVSEVLHQAEETDKGEIQNSQMQDTLASSNDNGSYGVIEQVTQVNKPSPEDHQCQSSIVTQADSDNNGSSYKCYYKRRKYTKS 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91295g00005 1185 CDD Tudor_Agenet_AtDUF_rpt1_3 22 98 - -
Stsc91295g00005 1185 Gene3D - 922 1074 - -
Stsc91295g00005 1185 ProSiteProfiles Zinc finger PHD-type profile. 771 816 IPR019787 -
Stsc91295g00005 1185 MobiDBLite consensus disorder prediction 1115 1134 - -
Stsc91295g00005 1185 MobiDBLite consensus disorder prediction 613 642 - -
Stsc91295g00005 1185 SMART PHD_3 773 814 IPR001965 -
Stsc91295g00005 1185 SMART PHD_3 815 867 IPR001965 -
Stsc91295g00005 1185 Coils Coil 1184 1185 - -
Stsc91295g00005 1185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 870 IPR013083 -
Stsc91295g00005 1185 MobiDBLite consensus disorder prediction 1147 1170 - -
Stsc91295g00005 1185 MobiDBLite consensus disorder prediction 1117 1134 - -
Stsc91295g00005 1185 CDD PHD_SF 814 865 - -
Stsc91295g00005 1185 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 925 1076 IPR000182 GO:0016747
Stsc91295g00005 1185 SUPERFAMILY FYVE/PHD zinc finger 815 865 IPR011011 -
Stsc91295g00005 1185 SMART ring_2 774 813 IPR001841 -
Stsc91295g00005 1185 SMART ring_2 815 863 IPR001841 -
Stsc91295g00005 1185 SMART agenet_At_2 18 80 IPR014002 -
Stsc91295g00005 1185 SMART agenet_At_2 105 162 IPR014002 -
Stsc91295g00005 1185 Pfam Tify domain binding domain 696 746 IPR032308 -
Stsc91295g00005 1185 CDD NAT_SF 965 1025 - -
Stsc91295g00005 1185 SUPERFAMILY FYVE/PHD zinc finger 748 814 IPR011011 -
Stsc91295g00005 1185 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 950 1052 IPR016181 -
Stsc91295g00005 1185 Pfam Agenet domain 24 98 IPR008395 -
Stsc91295g00005 1185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 815 IPR013083 -
Stsc91295g00005 1185 Pfam PHD-finger 773 815 IPR019787 -
Stsc91295g00005 1185 PANTHER PHD FINGER PROTEIN 12 467 1158 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91295g00005 Stsc-Chr91295 22387 28509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91295g00005 29 427 PHD Transcription Factor Family AT5G58610 34.634 1.98e-64 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc91295g00005 Agenet 6.2e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91295g00005 - - aip:107644722 1824.68