Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91290g00004 ATGGGAAGAAAAGCTGCTACTACTTGTTCCTCCTCCTCTAACAACCACCACCACCTTCTCCTTTCAACTTCTTCCTTGAATCTCAGGCTTGCACTCGGCACTCATCATCATCATCATCAACATAATGAAGAATGTGGTGGTGGCACCCTGTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGGAGGAAACTCAACATACTAGCACATGGAAGCTACCATGACCTTGTCAACACTCTTGAGAACATGTTCGACACCACCATTCTCTGGGGTAGAGACATGGATGAAGTTGTTGTTCCACCTGGTGAGAGATGCCATGTCCTCACTTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGGGATGTTCCTTGGGAGATGTTTGTTTCAACTGTAAAGAGGTTGAAGATCACAAGGGTAGATACATTTGCTTCTTGA 438 0.4429 MGRKAATTCSSSSNNHHHLLLSTSSLNLRLALGTHHHHHQHNEECGGGTLFVKVYMEGIPIGRKLNILAHGSYHDLVNTLENMFDTTILWGRDMDEVVVPPGERCHVLTYEDEEGDLVMVGDVPWEMFVSTVKRLKITRVDTFAS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91290g00004 145 Gene3D - 44 145 - -
Stsc91290g00004 145 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 141 IPR003311 GO:0005634|GO:0006355
Stsc91290g00004 145 Pfam AUX/IAA family 36 139 IPR033389 -
Stsc91290g00004 145 SUPERFAMILY CAD & PB1 domains 41 138 - -
Stsc91290g00004 145 ProSiteProfiles PB1 domain profile. 49 142 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91290g00004 Stsc-Chr91290 25888 26512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91290g00004 53 137 B3 DNA Binding Superfamily AT4G23980 36.047 5.43e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc91290g00004 AUX_IAA 5.2e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91290g00004 K14484 - gmx:100818376 159.844