Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91290g00002 ATGGGAGAGAATATGCTCAACTCCAGCTGCACAGGGATGAAAAGAAGCTCCTCCTTATCCTCCTTGTTGCATGTGAATAAGGATATTGGTGAGCTGGTATGGGAAAATGGTGAAGTTAAAGTTCATGGAGGAGGAGGAGAAGCAGCAGCAGTGGAAGAAAGACCAGCAAAGTTAGACAGATTGGATCAGAGCAAGAAGCAGATCCAGCAAGGATTTTCAACCTTCAAACTCAATCATAGTGTTGTTGGAAAAGTTAATAGTAATAGCAATAGCAAGCAGTTATGCACATATTCCTCCTTCAACTCCACCTTACCACCACAGTGCAAGAAACCAAGAATAATAGATTCTTCAGATTCATCCCAAGCAACAACAAAATCACACACACTACAGTACTTGGGAACTTGTAACAACAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAGAGAACATCATTAGGAGGAGGAGGAGGAATGGTTAACTTCCCTAACTTCTTGATTCCTGCACTCTTCCTCAACAAATCTTCTTCTGCTGCTGCTGCCACTAGTAGCAAAGGTCATGACCATTCATCTGTGGTGATTGATTCTTCTAACAATAACAAATCAGCAACACAAGAACTCAAAGAAAGACCTTTTCATCAGGTACAGGTACAACCACTTGATCAACACTCTCATGCTCAACAATTATACCATGGAGCCTCATCAAGTTCAGCAGCACCACCACCACCACCTAATTCTAATAGAAACAATAATAATGAACAACACTTGGTAGCATCTTCCCCTGTATGCTCTATTGGAGCCTCAAACGACCCTATTATGAAGAAGCAGCATGAGGAATACACCAACATCACTGATCATGATGACACCACAACATATATAAGTGATGATGATGATGAAGAAACAGAAGATGTAATAGCAAAGGAAACACCAGCAGCAGGTACCAGAGCCAAGAGAAGCAGGGACCCAGAGATTCACAATTTATCTGAAAAGAAGCGAAGAGATAAAATCAACAAGAGGATTTGTACATTGAAAGAACTCATACCCAACTGCAATAAGAATGATAAAGCTTCAACACTTGATGATGCCATTGACTATCTTAAGACACTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGTGGAGTTTGCATGCCAGTGATGATGTTACCAAATCACCAAAATCAGTTAATGGGAGGTGGAACTGGAATGTGTTATAGGCCATCAGGCACAGGCATTCCCCAGTTCCATATTCCTCATGCTGCTGCTATCACAGACAGCACAACACTAATTCAAAACATGTTTGGTGCTGGTGGTTTCTTCAACCAAATGAGGCCTATGATTATGCCACCATCACCACCTTTCATCAATCCTATCACTGGAAACCCTTCAATTACTCCACCACTTGCCCCAATGTCAATCACCAATTCTTCCAGTCTAGAGGTCTCAAATGTTCAAGCAATGATGAAGCCTGAATATGTAATCAATAATGATAATAATCATGTTTCCCTTCACCAACACGGCACTAGCAGCAGCTACCCCTTTTATTTTCCCACAATCATCAATTAG 1593 0.3999 MGENMLNSSCTGMKRSSSLSSLLHVNKDIGELVWENGEVKVHGGGGEAAAVEERPAKLDRLDQSKKQIQQGFSTFKLNHSVVGKVNSNSNSKQLCTYSSFNSTLPPQCKKPRIIDSSDSSQATTKSHTLQYLGTCNNNNNNNNNNNNNNNNNNNNNNQRTSLGGGGGMVNFPNFLIPALFLNKSSSAAAATSSKGHDHSSVVIDSSNNNKSATQELKERPFHQVQVQPLDQHSHAQQLYHGASSSSAAPPPPPNSNRNNNNEQHLVASSPVCSIGASNDPIMKKQHEEYTNITDHDDTTTYISDDDDEETEDVIAKETPAAGTRAKRSRDPEIHNLSEKKRRDKINKRICTLKELIPNCNKNDKASTLDDAIDYLKTLKLQLQIMSMGSGVCMPVMMLPNHQNQLMGGGTGMCYRPSGTGIPQFHIPHAAAITDSTTLIQNMFGAGGFFNQMRPMIMPPSPPFINPITGNPSITPPLAPMSITNSSSLEVSNVQAMMKPEYVINNDNNHVSLHQHGTSSSYPFYFPTIIN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91290g00002 530 CDD bHLH_AtPIF_like 329 390 IPR047265 -
Stsc91290g00002 530 MobiDBLite consensus disorder prediction 104 164 - -
Stsc91290g00002 530 MobiDBLite consensus disorder prediction 322 340 - -
Stsc91290g00002 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 389 IPR036638 GO:0046983
Stsc91290g00002 530 MobiDBLite consensus disorder prediction 113 164 - -
Stsc91290g00002 530 MobiDBLite consensus disorder prediction 190 244 - -
Stsc91290g00002 530 SMART finulus 335 384 IPR011598 GO:0046983
Stsc91290g00002 530 MobiDBLite consensus disorder prediction 315 340 - -
Stsc91290g00002 530 Gene3D - 321 379 IPR036638 GO:0046983
Stsc91290g00002 530 Pfam Helix-loop-helix DNA-binding domain 334 378 IPR011598 GO:0046983
Stsc91290g00002 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Stsc91290g00002 530 PANTHER TRANSCRIPTION FACTOR PIF3 16 508 IPR044273 GO:0003700|GO:0006355
Stsc91290g00002 530 MobiDBLite consensus disorder prediction 190 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91290g00002 Stsc-Chr91290 13838 16106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91290g00002 246 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 40.659 5.85e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc91290g00002 HLH 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91290g00002 K12126 - gmx:100804665 202.601