Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91286g00002 ATGGTTGAAATTGTAGAGAAAAAGTGCAAAGGACATGAAAAGGGCGGCCGGTGCAAAGCTATGAAGAAAAAGAAACTGGCCATGGCGGCTGTGGCTGCTACTTTAGGTGGAATATTCATCATTGCAATAGTAATTGGAGCCCTTCTATACAAGAAGCAAATTCAAAACAAGAGAAAAGCAAAGGAAAAGGAAACGAAGAACAAAAAGAAGAAAGAAATAATCACAAGTACCAAAGCAACTCCATTGTCATCAAGGATCTTCACAGGCAGAGAGATTACGAAAGCAACCAACAACTTCGCCGAAGAAAACCTCATCGGCTCCGGCGGCTTCGGTGAAGTGTTCAAAGGCACTTTTGAAGACGGTTCCACAATTGCCATCAAGCGTGCCAAGCTTGGAAACACAAAAGGCATTGACCAAATCCAAAATGAAGTTAGGGTACTCTGCCAAGTTAACCATAGAAGCCTAGTGAGGCTACTTGGTTGTTGCTTGGAGCTAGAACACCCTTTACTAATTTACGAGTATGTTTCTAACGGGACACTCTTTGATTACCTCCATCGCCAACCTTTCGCCAGTGATGGCGAAAGGAAAGGCAAAAGGGAGCCACTTAAATGGCTCATTAGGCTAAAAATTGCACACCAAACGGCCGAAGGGCTTTCGTATCTCCACTCTGCGGCCGTGCCTCCTATCTACCACCGAGACGTGAAATCTAGCAATATTCTTCTTGATGATAAGTTTGATGCCAAGGTTTCAGATTTCGGGTTGTCTAGGCTTGTTGAATTAGCTGAAGAAAACAAGAGTCATATCTTTACCAGTGCACAGGGGACACTAGGATACCTTGATCCGGAATACTACCGGAACTTTCAGCTGACGGATAAGAGTGATGTTTATAGCTTTGGAGTTGTGCTAATGGAGCTGCTCACTGCTCAGAGGGCTATTGATTTTAGCAGGGAGGAAGAGAATGTGAACTTGGCAGTGTATGCTAAGAAGAAAATAGTTGAGGACAAGCTTATAGAGGTTCTTGATCCGTTGCTTAAAGATGGAGCTAGCAATGTGGAACTGGAAACTATGAAATCTTTGGGCTATCTTGCAGCTTCATGCTTGGATGACCAGAGGCAAAAGAGGCCTTCTATGAAAGAAGTTTCGGATGAGATTGAATACCTTATTAATGTTCTTAAGGGTCAAGGTTCCAAATCCAAACCATAG 1203 0.4331 MVEIVEKKCKGHEKGGRCKAMKKKKLAMAAVAATLGGIFIIAIVIGALLYKKQIQNKRKAKEKETKNKKKKEIITSTKATPLSSRIFTGREITKATNNFAEENLIGSGGFGEVFKGTFEDGSTIAIKRAKLGNTKGIDQIQNEVRVLCQVNHRSLVRLLGCCLELEHPLLIYEYVSNGTLFDYLHRQPFASDGERKGKREPLKWLIRLKIAHQTAEGLSYLHSAAVPPIYHRDVKSSNILLDDKFDAKVSDFGLSRLVELAEENKSHIFTSAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLMELLTAQRAIDFSREEENVNLAVYAKKKIVEDKLIEVLDPLLKDGASNVELETMKSLGYLAASCLDDQRQKRPSMKEVSDEIEYLINVLKGQGSKSKP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91286g00002 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Stsc91286g00002 400 Pfam Protein kinase domain 100 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91286g00002 400 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 69 174 - -
Stsc91286g00002 400 ProSiteProfiles Protein kinase domain profile. 99 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91286g00002 400 CDD STKc_IRAK 105 385 - -
Stsc91286g00002 400 Coils Coil 51 71 - -
Stsc91286g00002 400 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Stsc91286g00002 400 PIRSF TyrPK_CSF1-R 17 85 - -
Stsc91286g00002 400 PIRSF TyrPK_CSF1-R 189 310 - -
Stsc91286g00002 400 PIRSF TyrPK_CSF1-R 356 399 - -
Stsc91286g00002 400 PIRSF TyrPK_CSF1-R 97 192 - -
Stsc91286g00002 400 SMART serkin_6 99 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91286g00002 400 FunFam Wall-associated receptor kinase-like 20 175 397 - -
Stsc91286g00002 400 SUPERFAMILY Protein kinase-like (PK-like) 80 382 IPR011009 -
Stsc91286g00002 400 Gene3D Transferase(Phosphotransferase) domain 1 175 397 - -
Stsc91286g00002 400 Gene3D Phosphorylase Kinase; domain 1 54 174 - -
Stsc91286g00002 400 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 387 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91286g00002 Stsc-Chr91286 9099 11298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91286g00002 41 391 Receptor kinase-like Gene Family AT5G02070 64.023 4.48e-161 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc91286g00002 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91286g00002 - - ahf:112794981 643.269