Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91276g00003 ATGGGGTGTTTACATTCGAAAACCGCTCATCTTCAATCTCCTGAAGACCCTCCCACTGACTTACCAGACCCCAACAAGCCCGATCCAGGCGATGGGGTTGGTGGCGACGGAGGAGGAGTGAGTGAGGTTCCGGCATTCAAAGAATACAGTTTAAGTGAACTGAGAAGAGTAACAAATGAGTTCAACGCGAAGAACATAGTGTCAGAGAGTGGTGAGAAGGCTCCAAACGTTGTTTACAAAGGGAAGCTTGAGAACAATCGCTTTGTTGCTGTCAAGCGCTTCTCCAAACTTTCTTGGCCTGATGCTCAACAGTTCATGGTAGAGGCTGCTGGAGTTGGGAAAGTGAGGCACAAGAGACTGGTGAATCTAATTGGTTGTTGCGCCGAAGGAGATGAGCGGCTCTTGGTAGCCGAGTTCATGCCGAATGATACTTTGTCAAAGCATCTCTTTCATTGGGACAAGCAACCATTACCGTGGGAAATGCGTGTTAGAGTTGCATACCATGTTGCTCAGGCACTGGATCATTGTAGCTGCGAAAACCGAAAAATATACCATGATCTAAATGCATATAGGATTCTCTTCGATGAGGATGGTGATCCCCGGTTATCTAGTTTCGGGCTTATGAAAAATAGTCGAGATGGAAAAAGCTACAGTACTAACTTAGCATATACTCCACCTGAATTTTTGCGAACAGGTAGGATAATCCCTGAGAGTGTGATTTACAGTTATGGAACTGTTCTTCTGGATCTATTGAGCGGGAAGCATATTCCTCCGAGCCATGCACTTGACCTAATTAGAGGGAAAAATGTATTGATGTTGATGGACTCTTCCCTTGAAGGGCAATATGCAAATGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAGTGTCTTCAGTTTGAGGCTAGAGAACGACCCGATATCAATTTTCTTCTTACTGCAGTTACACCCCTTCAGAAGCAGAAAGAGGTAGCATCACATGTGTTAATGGGCCTTACTGTAAATAACACACCGGTGCTTCCGACCATACTTTCTCCACTTGGAAAGGCTTCTGCGAGGATGGATCTTACTGCGGTGCATGATATATTGTTAAAAACCGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGCTTTCTTTCCAAGAGTGGACACAACAAGTGCAAGATATATTGAATACAAAGAAGTTTGGGGATATTGCATTTAGAGACAAGGACTTCAAAAATGCAATTGAGTATTATTCTAAGTTGGTGGTTATGATGTCGGTTCCTTCCGCAACCGTCTTTGCAAGGAGATCCTTTTCCTACTTAATGAATGATCAGGCCGAACTTGCATTACGCGATGCCATGCAGGCTCAAGTATGCATAAGCGATTGGCCGACCGCATTCTACCTGCAGGCTCTCGCCCTCTCGAAGCTAGGAATGGACACCGATGCTCAGGACATGCTTAACGACGGGGCAGCCTTTGAAGCGAAGAGGTCTAACAGTTGGCGTGGCTAG 1497 0.4509 MGCLHSKTAHLQSPEDPPTDLPDPNKPDPGDGVGGDGGGVSEVPAFKEYSLSELRRVTNEFNAKNIVSESGEKAPNVVYKGKLENNRFVAVKRFSKLSWPDAQQFMVEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEFMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSCENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLMLMDSSLEGQYANDDATKLVELASKCLQFEARERPDINFLLTAVTPLQKQKEVASHVLMGLTVNNTPVLPTILSPLGKASARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRSFSYLMNDQAELALRDAMQAQVCISDWPTAFYLQALALSKLGMDTDAQDMLNDGAAFEAKRSNSWRG 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91276g00003 498 FunFam probable serine/threonine-protein kinase At4g35230 388 497 - -
Stsc91276g00003 498 SUPERFAMILY TPR-like 389 487 IPR011990 GO:0005515
Stsc91276g00003 498 SUPERFAMILY Protein kinase-like (PK-like) 44 316 IPR011009 -
Stsc91276g00003 498 FunFam probable serine/threonine-protein kinase At4g35230 37 139 - -
Stsc91276g00003 498 Gene3D Phosphorylase Kinase; domain 1 39 139 - -
Stsc91276g00003 498 Pfam Protein tyrosine and serine/threonine kinase 77 312 IPR001245 GO:0004672|GO:0006468
Stsc91276g00003 498 Gene3D Transferase(Phosphotransferase) domain 1 141 333 - -
Stsc91276g00003 498 Gene3D Tetratricopeptide repeat domain 388 497 IPR011990 GO:0005515
Stsc91276g00003 498 ProSiteProfiles Protein kinase domain profile. 64 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91276g00003 498 FunFam probable serine/threonine-protein kinase At5g41260 141 332 - -
Stsc91276g00003 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 41 493 IPR045845 GO:0004672|GO:0009742
Stsc91276g00003 498 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91276g00003 Stsc-Chr91276 18486 23719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91276g00003 45 315 Glycoside Hydrolase AT3G07070 34.694 7.00e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc91276g00003 PK_Tyr_Ser-Thr 7.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91276g00003 K14500 - gmx:100793576 890.182