Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91274g00002 ATGGCCGGATCGTCGTGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCATCCGGAGCAAGTGGGAAAGTTTTATGGAAAAGCAATCCTACCAGAGCTTGTCCAAATTGTCAACATGTTATTGATAACAGTGATGTAGCACAAGAGTGGCCTGGATTACCGAAAGGTGTGAAATTCGATCCATCTGATCAAGAGATAATATCACACTTGCTTGCAAAAGTTGGTTCCTCAAGTTCAGATCCTCACCCTTTCATTGATGAATTTATTGCTACTCTTGAAGTGGATGAAGGAATTTGTTATACTCATCCTAAACATTTACCAGGTGTCAAGCAAGATGGTAGTGCTACACACTTTTTCCACAGATCAATCAAGGCTTATAACACAGGCAACCGAAAGCGTCGGAAAATAAACGACCAGGATGATGGTGATGTTCGCTGGCACAAGACCGGAAAGACTAAACCTGTCGTCTTGGACGGCGTTCAGAAAGGCTGTAAAAAGATCATGGTTCTATATATGACTTCAGTGAGAGGAGTAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACTTAGGAACAGATGAAGATGAAAAGGATGGAGAGTATGTTATCTCTAAAGTGTTTTACCAGCAACAAGCTAAATTTGGTGAAAAAGATGATCATGATGTTCCTGGAACCAATGAAGCAACTGTTGTGAAATCTGATCCAGTTACATCTCCTCATAGTGAAAACCGATGTTCGGATCTCGACATGGGAGAAAAATCACATCAGATTCCTCAGGATCCTCAGACCGATTATGTAGAAGATGATAAAGCTGATTGTGAAGAGATTGAGAAAACGGACGTGTCCATGGCGGATGCTCAAAACAATGAAGGGATGGATAATGTAGAAAACAATGGTGATGGAGAACAAAAATGGTGGGACAGTGAGTCACAGAATTTATTAGATTCACAACAACTTGTGGAAGCATTGGCCTTGTGTGATGATCTCCTCCATAGCCAGTGTTCCAATAAGGATGATGAGAATGGAGAACACAAGGAGCAGTTGAGCCTTTCAATCTATGCTCATCTAGGACCAGATCATCTGAAGAGAGATATTGAAGAGTGCCAAAACCTTACCCTTGATCCTGCAAACACGGAGCTCGAAACACCACCTTCCGAGTTTCGACTAAGTCAGCTGGAATTCGGTTCGCAGGATAGCTTTGTTTCCTTGAGTGGCGGCAAGGCAGTCGACTAA 1248 0.4199 MAGSSWLVDKSRIATKIKSASGASGKVLWKSNPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIISHLLAKVGSSSSDPHPFIDEFIATLEVDEGICYTHPKHLPGVKQDGSATHFFHRSIKAYNTGNRKRRKINDQDDGDVRWHKTGKTKPVVLDGVQKGCKKIMVLYMTSVRGVKAEKTNWVMHQYHLGTDEDEKDGEYVISKVFYQQQAKFGEKDDHDVPGTNEATVVKSDPVTSPHSENRCSDLDMGEKSHQIPQDPQTDYVEDDKADCEEIEKTDVSMADAQNNEGMDNVENNGDGEQKWWDSESQNLLDSQQLVEALALCDDLLHSQCSNKDDENGEHKEQLSLSIYAHLGPDHLKRDIEECQNLTLDPANTELETPPSEFRLSQLEFGSQDSFVSLSGGKAVD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91274g00002 415 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 374 IPR044799 GO:0003700
Stsc91274g00002 415 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Stsc91274g00002 415 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Stsc91274g00002 415 Gene3D NAC domain 65 219 IPR036093 GO:0003677|GO:0006355
Stsc91274g00002 415 MobiDBLite consensus disorder prediction 235 249 - -
Stsc91274g00002 415 MobiDBLite consensus disorder prediction 219 271 - -
Stsc91274g00002 415 FunFam NAC domain-containing protein 8 65 218 - -
Stsc91274g00002 415 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91274g00002 Stsc-Chr91274 22539 26572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91274g00002 32 218 NAC Transcription Factor Family AT1G28470 57.513 6.92e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc91274g00002 NAM 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91274g00002 - - gmx:100787702 641.343