Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91272g00006 ATGGGTTCTGTGAGTAACACAAATCCATGGGTAGCTCCAAACGCTGTTTTGAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCCCAATGGTGCTACATCATGTACTCTCCTCCACCTCCTTCAATCGTTCTTGGCGACGATTCTGATGACGATGATGCTTCCTCTGGCTTCCAATTCTCTCCCCTCATAGTTGCAGTCATTGGAATCTTGGCAAGCACTTTCATCTTGGTCACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGGAGAATCAACGATCCGAATTATCAAGAAAATCGCAGTAGCAACGATGATAGTCTTAATAACAATGAATCTTCTCTGGCTTCTGCGACTTACGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACGTAAAGAACGGTGGGTTAGTTGAAGGGAGCGACTGTTCTGTTTGTTTATGTGAGTTTCAAGAAGATGAAAGCTTGAGATTGCTGCCGAAATGTAACCATGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCATTATGCCGTTCCAATATTGTTTTCAATAATAATAGTAATAATCCGAATCTGAGTGAGAGTGATTCGGCGGAGATTCCGCATCCGCCACCGGCAAGGGTTAGTGTCAATTCTTTGGAATATCAACAGAGAAGTGATGATATTGTTACAATAATTATTCATAGTTCACAGCAAAGTTCACAGCGGCAGCAGCAGCAGGAGGTTGTGGTTGATTTTGGTAATGAAGTCCAAGTAAAGTGGCCAAATGTTGCAAGTGCTAATAATAATAATAATGGAGAGAATTTGAATCGGCATTCCACTAGTCAAAGAAGATTATCTGTTGCTGACATATTGAATCAAGATCATGAAGCTGATGATGTGTAG 927 0.4186 MGSVSNTNPWVAPNAVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDDSDDDDASSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRINDPNYQENRSSNDDSLNNNESSLASATYGMDEAQIKSITVCKYVKNGGLVEGSDCSVCLCEFQEDESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFNNNSNNPNLSESDSAEIPHPPPARVSVNSLEYQQRSDDIVTIIIHSSQQSSQRQQQQEVVVDFGNEVQVKWPNVASANNNNNGENLNRHSTSQRRLSVADILNQDHEADDV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91272g00006 308 FunFam E3 ubiquitin-protein ligase ATL6 113 198 - -
Stsc91272g00006 308 PANTHER RING-H2 FINGER PROTEIN ATL16 53 268 IPR044600 GO:0016567|GO:0016740
Stsc91272g00006 308 CDD RING-H2_EL5-like 149 192 - -
Stsc91272g00006 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 200 IPR013083 -
Stsc91272g00006 308 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Stsc91272g00006 308 Pfam Ring finger domain 149 192 IPR001841 -
Stsc91272g00006 308 SUPERFAMILY RING/U-box 144 201 - -
Stsc91272g00006 308 SMART ring_2 150 191 IPR001841 -
Stsc91272g00006 308 MobiDBLite consensus disorder prediction 271 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91272g00006 Stsc-Chr91272 23601 26670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91272g00006 1 196 C3H Transcription Factor Family AT3G03550 53.081 2.27e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91272g00006 - - adu:107495094 451.44