Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91271g00005 ATGGTTTCCATTTTCTCTCTCTATCCATACAATCCCCTCCTCTATTCTTCTTCTTACGTGAGGAACTTTCTCGAATGCCACTTCAGTTCCAATTCTGCATCTTCATCCTTTGACGGAAGAGGAGGAGGAGGTGGTGGCGTTGGTGGTGGTGGCAGTAAGGTGCTGCTTCTGGTTGCTGCGGCGCATTCCAATCCGAACATTCTCAAGACCAACCGCAAGTCTAAGTACGGTTACCCTCTCTCTACCTACGATTCCGACGATGATGATGACGACGACGACGACGAAGATGATGACGGTGATTGGCTCTCTGATGAAGAATTTGCTGAGCCTGCTCCCTTGGACACTAATGGCAAGAGATCTAAGTTGCATGCCATGAAAGGAAAAGAAAGACAAAATGAAAAGGAGTGGGATATAAGAGATTTTGATAGTGAACCGAGAACTAGAATCCGTGGAAGAAGCAAGGGAGTGGCATCTCTACGGAAGAACTACAATCGAAAGCTTGATAACTTAAAGGAGAAGAAATATCCACGGCTGTCGGAAGAGATTATATTGGATTCGAGATGGTTACCGCTTCTTGATTACTTAAGCACCTTTGGAATCAAGGAGTCACACTTTATCCAGATGTATCAAAGGCACATGCCGTCACTTCAAATCAATGTATGCTCTGCACAGGAAAGGTTAGATTACTTAATGAGTGTCGGTGTCAAACATAGAGATGTTAGAAGAATCCTTGTGAGACAGCCTCAGATTCTGGGGTACACGGTGGAGAACAATTTGAAGTCTCATGTTGCTTTCTTGACAGGCTTGGGAATACCAAGTTCCAGGGTAGGGCAAATCATTGCTGCTGCTCCATCGCTTTTTTCTTATAGTGTTGAAAATTCATTAAAACCAACAGTAAGATATTTAGTTGAGCAAGTCGGAATCAAGGAAAGAGACTTGGGTAAGGTCATTCAGCTAAGCCCACAAATTCTTGTCCAGCGCATTGACGTTTCATGGAATACTCGGTATATGTTTCTAATGAAAGAGTTGGGAGCACCCAAAGATAGCGTAGTGAAGATGGTGACGAAACATCCTCAGCTTCTCCACTACAGCATAGATGATGGATTACTTCCAAGGATAAACTTCCTAAGAAGCATAGGAATGAAAAATTCAGATATCTTGAAAGTATTGACTAGTCTTACACAGGTGCTATCTCTGTCCCTAGAGGACAATTTGAAGCCCAAGTATTTGTACTTGGTAAATGAACTCAACAATGAGGTGCAATCCTTGACCAAATACCCAATGTACCTTAGCTTGTCTTTGGACCAAAGAATTCGTCCTCGTCATAGGTTCTTGGTTTCCTTGAAGAAAGCGCCAAAAGGACCATTTCCACTTGGATCTCTTGTTCCAACTGATGAATGCTTTTGCCAACAGTGGGCTGGAACTAGTGTGGATAAATATTTGGCATTTCGTCAAAGATTATTAGTCAGAAAGTTTGCTGAGAAATTCCAAAGTAAAATGTGA 1503 0.4251 MVSIFSLYPYNPLLYSSSYVRNFLECHFSSNSASSSFDGRGGGGGGVGGGGSKVLLLVAAAHSNPNILKTNRKSKYGYPLSTYDSDDDDDDDDDEDDDGDWLSDEEFAEPAPLDTNGKRSKLHAMKGKERQNEKEWDIRDFDSEPRTRIRGRSKGVASLRKNYNRKLDNLKEKKYPRLSEEIILDSRWLPLLDYLSTFGIKESHFIQMYQRHMPSLQINVCSAQERLDYLMSVGVKHRDVRRILVRQPQILGYTVENNLKSHVAFLTGLGIPSSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEQVGIKERDLGKVIQLSPQILVQRIDVSWNTRYMFLMKELGAPKDSVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEDNLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSVDKYLAFRQRLLVRKFAEKFQSKM 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91271g00005 500 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 SMART mt_12 387 419 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 SMART mt_12 241 272 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 SMART mt_12 351 382 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 SMART mt_12 277 309 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 SMART mt_12 314 346 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 MobiDBLite consensus disorder prediction 78 139 - -
Stsc91271g00005 500 Pfam mTERF 187 447 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 PANTHER CGI-12 PROTEIN-RELATED 173 274 IPR003690 GO:0003690|GO:0006355
Stsc91271g00005 500 Gene3D Transcription termination factor 3, mitochondrial 249 487 IPR038538 -
Stsc91271g00005 500 MobiDBLite consensus disorder prediction 83 107 - -
Stsc91271g00005 500 MobiDBLite consensus disorder prediction 119 139 - -
Stsc91271g00005 500 FunFam Transcription termination factor MTERF9, chloroplastic 252 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91271g00005 Stsc-Chr91271 26066 29062 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc91271g00005 mTERF 1.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91271g00005 K15031 - gmx:102660933 688.723