Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91270g00003 ATGGAGGAACTCTCCGTATCAGAAGGAAAAGACGGAGGAGGAGTCTTCCAGAAGGTTCTACCCCCTTCCAAAAACGACGACGTCGTATTGCTCAACGGCAAGCCAGTCATCGTCGCCCAGCCCCTCACAGTGGTCCGCTCCCTCACCAGCATCCGTGTCCTTGCACCTCATGATTCTGCCGACTCGCTGAGTCAACCCGGACGAGTCGAAACAACCACTGGAAACAACGCGAATGAGGAAAACTCGCAAGAGCAAGAAACAGAGCCGAAACGCGTTTCTTCTGAGATGCAAGAAAAAACGCGTTTCGGGAACGACGGAGATTCTCAATCGGAGGTGGTGGTGGAAACTCAAGTGCAGCAACAAGAGCCCCAAGGAGAAGGTAAACGCTCTGCGATGTCTTTTGAGGAGTTTCTACAGGCTACGAACACGAAAGTTGCGTCTGCAGAGGAGGCTCTGAAACCGGTTGCTGAGAGCGTTGTTGTTCGCGTGAAGGAGGAACCGGCGGTGGCGGATGATGATGAGGTGGCGATTCTGAGGGTGAAACAAGCGCCGAAGGTTGAAGTGAAGATGGAGAAGGTTGAAGAGAGGATTCCGGGACTGGAAGACGGTGAATTCAATGTGCCGCAAGGGTGGTTGCTGATGGGAAGAAAGGTGGAGATTGCAATTTCAACGGCGAAAGGAGTGCGGCGATTGGTAGATAATGAGATCGTTCACTTTGATTTCCCACGAGCTACTTCGTCTCACAAGTTTCAATCCATCGTTCGCATCTCAACTAGGCGTTCTGGAGGGGTTGGGAGGCTTCCAATGGAGTGGGCAAGGACTGTAGTTCCTCTTGTGCAATCTGGGTTTGTTCAGGTTCGAGGTCGATGTGTAGCTGTACCGTATAACCTTCAAATGATGCAAGAAATCATGCTGTTAGTAAGCTTTTATATTCACCAATCTGTATTCACAGAATGTGTCAAAAATTCATGGAGGATAGAAGGTCGTGGTAACAGTGATTCTACCATCAAGCCACTGCTTCAACTGTTCAAAATGCTAGAGATTAAACCATATCAGAAGGCTGAGTTCACCCCAGATGAAGTTTCCAGAAAGCGGTTGCGAAATTCCGGGAAGCCTAATTATGTTGATGCTGCCTGCCAGGTTGACACAGAAGAAGCTGCAGCTTTACATGCGATCAAGCAAAGAAAGGTGGATGAAACAGGGAGGGGTGTCAGACAGTCTCCAGAGCAGAATGAGAATGAACAATCTCTTTCAGAGTCAGCTTTGAATAGGCTTGTTGGAGCTACAGAAATCTATGATCTGCAGGAGAAGGATGCGCCACAATCGCTTAAGTGTGTTCTGAAGCCCTACCAGAAACAAGCTCTCTATTGGATGTCAGAGATAGAAAATGGAAATAGGGCCGATACTGCTGAGACTAAGCTCAACCCTTGTTGGTCTTCCTACAAAATATGTGAAGGGAGAATGATTTATGTGAATATCTTCACTGGAGAAGCAACAACCACAATTCCAAGAGCTACTCAGATGGCAAGAGGAGGGATTCTAGCAGATGCAATGGGACTTGGAAAAACAGTCATGACAATTGCTCTGATTCTCAGTAACACAGGCAGTGATAATGCAGAAAATGATAACCTTATTACTAATAGGAGGAGGGGATCCAATAAGCTTAATGGTGGCACTCTTATTGATGAGCTTGAAACACATTCAAAAGAAGGTAGTTTATCCATATTTATTCATTATGGTGGGGGTAGAACCACTGATCCTGAGTTGCTTGCATCTCATGTTGTCTTAACAACATATACTGTCCTATCAGGAGCATATAAAAATGACGGGGAGAGAAGCATCTACCACAGGGTCCAGTGGTACAGGGTTGTGCTAGATGAAGCTCACACTATTAAAGCCCATAAAAGCCAGGGTGCCATGGCTGCATTTGCTTTGACCTCACACTGCTGCTGGTGTCTAACTGGAACTCCTCTTCAGAATAGCTTGGAAGACCTTTACAGCCTGTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGAGCAAATTGATTCAAAGGCCTTATGAGAACAATGACCCAACAGCCTTGAAATTAGTGAAGGCCATTTTAAAGACAATGATGTTAAGAAGAACTAAGGAAACAAAGGATAAGCACGGAAGGCCTATTCTTCTCCTGCCACCAGTTGATACTCATTTTATTGAGTGTGAGCAGTCAGGATCTGAATGTGACTTCTATGAGGCCCTCTTCACTAGATCTAAGATCCAATTTGATCATTATGTTGCACAAGGAAAGGTTTTGCATAACTATGCGAATATCCTTGACCTGCTATTGCAATTGAGACGGTGTTGTAATCATCCATTTTTGGTTATGAGCGGTAACTCAGAAAAATATGCAGACTTGAGCAGACTAGCAAGAAAATTCTTGCAGTCTAGTGCTGAGTCACTCAACATATGTAGTAGTGAAAATGATCCACAGAAACAAGCAGAGTTGAATAAACTCGCAACCAAATTCCTTAGGGATGCTGATTCTTCTTCGACCTCCATGCAATCTCGTGCATACATTGAGGAAGTTTTAGAGCATATTCAAAAGGGTGAAAACTTAGAATGCCCTATATGCATGGAGGCACCAGATGATCCTGTGTTTACTCCTTGTGCACATAGGTTCTGCAGAGAATGCCTATTCAGTCACTGGGGGACCTCAGAGGGTGGTAAATGCCCAATCTGTCGTCAGCAACTCCACAAAAGTGATCTGATTATTTGTCCATCTGAAAGTGCGTTCAAGGTTGATATTGAGAACAATATGACAGAATCTTCAAAGGTTTCAAAGCTCTTGGATTTCTTGCAAAACATTCAGAAGTCATCCCCTGGTGAAAAAAATATTGTGTTCAGTCAATGGACATCGTTCTTTGATCTGTTGGAGAATCCCCTCAGAAGAAGAGGAATTGAATTTCTGAGATACGATGGCAAATTGACCCAGAAACAGAGGGAGAAAGTTCTGGCTGAATTCAATCAAACAAAAGAGAAAAGGGTCTTGTTGATGTCATTAAAAGCTGGTGGGGTTGGCCTAAACTTAACTGCAGCCTCAAATGTCTTCATTATGGATCCATGGTGGAATCCAGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATTGGACAGAAGCGAAGGGTTGTTGTTAGAAGATTCATTGTCAAGGACACAGTGGAAGATCGTTTGCGTCAAGTGCAGGCCAGAAAACAGAGAATGATAGCCGGAGCCCTTACTGATGACGATGTTCGGAGTGCTAGGATTCAAGATCTCAAAATGCTATTCACATGA 3330 0.4477 MEELSVSEGKDGGGVFQKVLPPSKNDDVVLLNGKPVIVAQPLTVVRSLTSIRVLAPHDSADSLSQPGRVETTTGNNANEENSQEQETEPKRVSSEMQEKTRFGNDGDSQSEVVVETQVQQQEPQGEGKRSAMSFEEFLQATNTKVASAEEALKPVAESVVVRVKEEPAVADDDEVAILRVKQAPKVEVKMEKVEERIPGLEDGEFNVPQGWLLMGRKVEIAISTAKGVRRLVDNEIVHFDFPRATSSHKFQSIVRISTRRSGGVGRLPMEWARTVVPLVQSGFVQVRGRCVAVPYNLQMMQEIMLLVSFYIHQSVFTECVKNSWRIEGRGNSDSTIKPLLQLFKMLEIKPYQKAEFTPDEVSRKRLRNSGKPNYVDAACQVDTEEAAALHAIKQRKVDETGRGVRQSPEQNENEQSLSESALNRLVGATEIYDLQEKDAPQSLKCVLKPYQKQALYWMSEIENGNRADTAETKLNPCWSSYKICEGRMIYVNIFTGEATTTIPRATQMARGGILADAMGLGKTVMTIALILSNTGSDNAENDNLITNRRRGSNKLNGGTLIDELETHSKEGSLSIFIHYGGGRTTDPELLASHVVLTTYTVLSGAYKNDGERSIYHRVQWYRVVLDEAHTIKAHKSQGAMAAFALTSHCCWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWSKLIQRPYENNDPTALKLVKAILKTMMLRRTKETKDKHGRPILLLPPVDTHFIECEQSGSECDFYEALFTRSKIQFDHYVAQGKVLHNYANILDLLLQLRRCCNHPFLVMSGNSEKYADLSRLARKFLQSSAESLNICSSENDPQKQAELNKLATKFLRDADSSSTSMQSRAYIEEVLEHIQKGENLECPICMEAPDDPVFTPCAHRFCRECLFSHWGTSEGGKCPICRQQLHKSDLIICPSESAFKVDIENNMTESSKVSKLLDFLQNIQKSSPGEKNIVFSQWTSFFDLLENPLRRRGIEFLRYDGKLTQKQREKVLAEFNQTKEKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVVVRRFIVKDTVEDRLRQVQARKQRMIAGALTDDDVRSARIQDLKMLFT 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91270g00003 1109 SMART HIRAN_2 214 311 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc91270g00003 1109 SMART ultradead3 443 692 IPR014001 -
Stsc91270g00003 1109 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 92 1109 - -
Stsc91270g00003 1109 Pfam Helicase conserved C-terminal domain 944 1056 IPR001650 -
Stsc91270g00003 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 945 1105 IPR001650 -
Stsc91270g00003 1109 CDD SF2_C_SNF 937 1058 - -
Stsc91270g00003 1109 MobiDBLite consensus disorder prediction 1 24 - -
Stsc91270g00003 1109 SMART ring_2 872 911 IPR001841 -
Stsc91270g00003 1109 MobiDBLite consensus disorder prediction 397 418 - -
Stsc91270g00003 1109 Pfam HIRAN domain 222 305 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc91270g00003 1109 ProSiteProfiles Zinc finger RING-type profile. 872 912 IPR001841 -
Stsc91270g00003 1109 Gene3D - 729 1109 IPR027417 -
Stsc91270g00003 1109 CDD RING-HC 870 911 - -
Stsc91270g00003 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 713 IPR027417 -
Stsc91270g00003 1109 MobiDBLite consensus disorder prediction 64 82 - -
Stsc91270g00003 1109 MobiDBLite consensus disorder prediction 58 112 - -
Stsc91270g00003 1109 CDD DEXDc_SHPRH-like 447 713 - -
Stsc91270g00003 1109 Pfam Zinc finger, C3HC4 type (RING finger) 869 916 - -
Stsc91270g00003 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 503 675 IPR014001 -
Stsc91270g00003 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 863 920 IPR013083 -
Stsc91270g00003 1109 ProSitePatterns Zinc finger RING-type signature. 887 896 IPR017907 -
Stsc91270g00003 1109 Pfam SNF2-related domain 450 791 IPR000330 GO:0005524|GO:0140658
Stsc91270g00003 1109 MobiDBLite consensus disorder prediction 83 105 - -
Stsc91270g00003 1109 Gene3D - 501 724 IPR038718 -
Stsc91270g00003 1109 SMART helicmild6 973 1056 IPR001650 -
Stsc91270g00003 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 1097 IPR027417 -
Stsc91270g00003 1109 SUPERFAMILY RING/U-box 868 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91270g00003 Stsc-Chr91270 14216 20354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91270g00003 86 1108 RAD5 or RAD16-like Gene Family AT5G43530 55.535 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc91270g00003 SNF2_N 3.8e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91270g00003 K15505 - gmx:100806677 1302.73