Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91256g00005 ATGCAACTCAATCACCTTTGCATTGTTCTACCACCAAATTCCAGTGAAATGGATCAACCTGATCAGAAGGCTTTTCAACTACCAAGGAAACAAGTTAAGGCCAAAACCAAAAAGCCTCCTCGTAGAGGTTGTGTGAGGCAAATGGTTTCTTTGGTCCAAGATTCTTTGAGCAAGTTGGCAATTTGCAAACATGGAGGGAAGAAAGAGAAGAGCAGCACATTTCACGACATGGACGGGGTGCAAGTTTCTGTCAAGATAGGGAGGGACAACCCTAGGATTTTCAGCTATGCAGAGCTCTTCATAGGGTCCAAAGGTTTCAGTGAAGACCAAGTTCTTGGCAGTGGAGGGTTCGGCAAAGTGTACAAGGCTGTTTTGCCGAGCGACGGAACGATTGTAGCCGTGAAATGCTGCTTGGCGGGGAAAGGGAAGCAATTTGAGAAGAGTTTTGCAGCAGAGTTAACCGCGGTTGCAGATCTTCGCCACAAGAATCTTGTCAGGCTGAGGGGATGGTGTGTTCATGAAGATCAGTTGCACCTTGTTTATGACTACATGCCTAACAGCAGCCTTGACCGTATACTCTTCCGGAAGCCGGAGAATTCAAAGACTGGGATTCTTGATTGGGGACAGAGAGAAAGAATTGTAAAAGGTTTGGCAGCCGCATTGCATTATCTCCATGAACAACTGGAAACTCAAATCATTCATAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCACATTTCAATGCCCGATTAGGTGACTTTGGCATGGCAAGATGGCTAGAACATGAACTCGAATACAAGCCAAGGAAGATATCCACTAGAATTGACCATTTCCGGTTGGGAGACACATCAAGAATCGGAGGAACGATAGGGTATCTGCCCCCTGAAAGCTTGCAGAAAGCAAGCCATGCTACTTCCAAATCCGATGTCTTCAGCTTCGGAATAGTTGTGCTAGAAGTGGTTTCCGGAAGGAGAGCCATAGACCTTGCATACCCAGATGATGAAATTATTTTGCTCGATTGGATCAGAAGGCTTTCTGATGTAGGGAAGCTTCTGGATGCAGGGGATACACGGATACCAGATGGTTCCTACAAGCTTTCAGAGATGCAGCATCTCATTCACATTGGTCTTCTCTGCACACTCCATGAACCGCAGCTGCGCCCGAGCATGAAATGGATTGTGGAAGCACTTTCCAATGTTTCATACAAGTTGCCAGCCCTCCCTTCATTTCATTCCCACCCTCTGTACATCTCTTTGTCCTCCGCATCCGAGACTAGTCGCAGCAGCACTAGTGGCAATAGCTTTGCTACGGAGAATACTAGCATCATAGCTAACTATACTTCATCAAACTATGTCACAGCTGCAGGGGAAACAGTATATATAACTGCTGAACATAAAAACAGTGAGATCATATCCTCCAGGAGCACGAATCAACATCGGCGATTCCCGGTGCTAGAGACTCCAAGGGAAATATCATTCAAGGAAATTATTTCAGCCACAGACAATTTTTCAGATTCAAGAAGGGTGGCAGAGCTAGACTTTGGAACTGCTTATCATGGCATCCTTGAAGACAATTGCCATGTTTTGGTGAAACGCCTAGGGATGAAGACATGCCCTGCCTTGCGTGACAGGTTCTCTAACGAGCTCCAGAATCTAGGCAGGCTTCGCCATAGGAATTTGGTGCAACTCCGTGGATGGTGCACTGAGCAAGGCGAGATGCTTGTTGTGTATGACTACTCAGCAAGTAGAATACTAAGTCAAGTGCTTCTCTGTCATAGCAATCATAGAACTGGATATTCTGTCCTTCAATGGCATCACAGATATAACATAGTGAAAACACTTGCCTGTGCAGTTCTGTATCTACATGAGGAATGGGATGAGCAAGTCATTCACAGAAACATTACCTCTTCAGCTGTAATTCTTGAACAAGATATGAACCCCAGACTGGGTTGTTTTGCTCTTGCTGAATTTTTGTCAAGGAATGAACACGGGCATCACGTAATCACAGACACTAGCAAATCGGCTTGCGGCATTTTTGGCTACATGTCACCGGAATATCTGGAATCCGGTGAAGCAACCTCAGCAGCTGATGTATACAGTTTTGGAGTTGTGGTGCTTGAAGTTGTAAGTGGACTGCTTGCAGTAGACTTTCGGCAGCCGGAGGTGCTGTTGGTGAAGAAGGTTCATGAATTTGAGACGCAAAAAAGGCCACTGAAGGAATTAGTAGACAAAAGACTCAATGGAGAGTGCAATGACAAAGAACTGCTGAGATTGATAAGACTGGGAATTGCATGCACCCGCTGCGACCCACAATTAAGACCAAGCATGAGGCAAATAGTAAGCATCCTTGATGGCAACGACAACTTACTCTGCCACAATCAAATGCTGTAA 2394 0.4553 MQLNHLCIVLPPNSSEMDQPDQKAFQLPRKQVKAKTKKPPRRGCVRQMVSLVQDSLSKLAICKHGGKKEKSSTFHDMDGVQVSVKIGRDNPRIFSYAELFIGSKGFSEDQVLGSGGFGKVYKAVLPSDGTIVAVKCCLAGKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVHEDQLHLVYDYMPNSSLDRILFRKPENSKTGILDWGQRERIVKGLAAALHYLHEQLETQIIHRDVKTSNVMLDSHFNARLGDFGMARWLEHELEYKPRKISTRIDHFRLGDTSRIGGTIGYLPPESLQKASHATSKSDVFSFGIVVLEVVSGRRAIDLAYPDDEIILLDWIRRLSDVGKLLDAGDTRIPDGSYKLSEMQHLIHIGLLCTLHEPQLRPSMKWIVEALSNVSYKLPALPSFHSHPLYISLSSASETSRSSTSGNSFATENTSIIANYTSSNYVTAAGETVYITAEHKNSEIISSRSTNQHRRFPVLETPREISFKEIISATDNFSDSRRVAELDFGTAYHGILEDNCHVLVKRLGMKTCPALRDRFSNELQNLGRLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQVLLCHSNHRTGYSVLQWHHRYNIVKTLACAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLGCFALAEFLSRNEHGHHVITDTSKSACGIFGYMSPEYLESGEATSAADVYSFGVVVLEVVSGLLAVDFRQPEVLLVKKVHEFETQKRPLKELVDKRLNGECNDKELLRLIRLGIACTRCDPQLRPSMRQIVSILDGNDNLLCHNQML 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91256g00005 797 PANTHER - 71 400 - -
Stsc91256g00005 797 SUPERFAMILY Protein kinase-like (PK-like) 478 784 IPR011009 -
Stsc91256g00005 797 SMART serkin_6 106 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91256g00005 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Stsc91256g00005 797 FunFam Receptor like protein kinase S.2 582 796 - -
Stsc91256g00005 797 Gene3D Phosphorylase Kinase; domain 1 463 580 - -
Stsc91256g00005 797 FunFam Receptor like protein kinase S.2 184 404 - -
Stsc91256g00005 797 Gene3D Transferase(Phosphotransferase) domain 1 585 793 - -
Stsc91256g00005 797 ProSiteProfiles Protein kinase domain profile. 106 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91256g00005 797 ProSitePatterns Protein kinases ATP-binding region signature. 112 141 IPR017441 GO:0005524
Stsc91256g00005 797 Gene3D Phosphorylase Kinase; domain 1 78 183 - -
Stsc91256g00005 797 CDD STKc_IRAK 515 786 - -
Stsc91256g00005 797 Pfam Protein kinase domain 107 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91256g00005 797 SUPERFAMILY Protein kinase-like (PK-like) 90 429 IPR011009 -
Stsc91256g00005 797 ProSiteProfiles Protein kinase domain profile. 504 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91256g00005 797 Pfam Protein tyrosine and serine/threonine kinase 510 784 IPR001245 GO:0004672|GO:0006468
Stsc91256g00005 797 Gene3D Transferase(Phosphotransferase) domain 1 184 405 - -
Stsc91256g00005 797 FunFam Receptor like protein kinase S.2 80 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91256g00005 Stsc-Chr91256 15543 18577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91256g00005 489 790 Receptor kinase-like Gene Family AT3G59740 33.007 6.77e-46 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc91256g00005 Pkinase 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91256g00005 - - gmx:100796108 1241.1