Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91250g00003 ATGTCCGATGCTGGGTCCTTCCCCATTGTGGCTGTCAAGGCAGGGAAGGTTAACGACTTCAGTGGAAAGTCTATTGGGACTATTTCTACTACACGGCTTTTCATAAACCCAGACTTGCCTGAGGCTCATACCTTAAGGGAATGGTTTGATAGAGTGGGTAAGGATTCAGTTTCTCAATCCATTTCTAAGGATGTTTTGCCAGGAGGACCAAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCTGATAAGCCAGACTGGATAACAGTGAGGGCAACCATATCATTCATCAAGACAGATACGTTTTGTTACACAGCTTGCCCTCTGATGATTGGAGACCGACAGTGCAATAAGAAAGTGACCAGGGTAGGTGACGCAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGTTACTTTCTTCAAGCCCAAATTGTGGATCATACAGGAATAACTTGGGTAACTGCTTTTCAGGAAGCAGCTGAAGAGATTATGGAGTACCCAGCAAAAGAGCTGTACTTGTTGAAGTATGAAGAGCAGGATGATGACAAGTTCGGAGAAATAATTAAGAGTAGCCTATTCAACCATTTTGTGTTTAGGCTTAAAATCAAAGAGGAATTGTATGGTGATGAACAGAGGGTTAAGGTAACAGTAGTCAAGGCAGATAAAGTGGATTATTCTTCAGAGAGTAGACGCATGCTTGAATCCATTTCCAAGTTTTGTAGACATTGA 768 0.4271 MSDAGSFPIVAVKAGKVNDFSGKSIGTISTTRLFINPDLPEAHTLREWFDRVGKDSVSQSISKDVLPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTRVGDARWQCDRCNQEFEECDYRYFLQAQIVDHTGITWVTAFQEAAEEIMEYPAKELYLLKYEEQDDDKFGEIIKSSLFNHFVFRLKIKEELYGDEQRVKVTVVKADKVDYSSESRRMLESISKFCRH 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91250g00003 255 FunFam Replication protein A subunit 59 252 - -
Stsc91250g00003 255 SUPERFAMILY Nucleic acid-binding proteins 75 252 IPR012340 -
Stsc91250g00003 255 Gene3D - 61 253 IPR012340 -
Stsc91250g00003 255 PANTHER REPLICATION FACTOR A 1, RFA1 2 230 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc91250g00003 255 Gene3D - 1 60 IPR012340 -
Stsc91250g00003 255 Pfam Replication protein A OB domain 4 36 IPR031657 -
Stsc91250g00003 255 Pfam Replication factor-A C terminal domain 94 245 IPR013955 -
Stsc91250g00003 255 SUPERFAMILY Nucleic acid-binding proteins 7 52 IPR012340 -
Stsc91250g00003 255 CDD RPA1_DBD_C 78 251 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91250g00003 Stsc-Chr91250 8067 9147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91250g00003 1 247 Core DNA Replication Machinery Family AT2G06510 70.161 9.33e-126 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91250g00003 K07466 - gmx:100792409 437.187