Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91247g00001 ATGCCTTACCAAAAAAGAGTTATGTGGAAATCCTTCATAGTTGGTTGTTTCAAGGACAAACACGTTTCTAATTCTTCCTTGGACGACACACAACACACATCAGCTTCAAAGAAGACATTTTCTCGGAGAATCTCCCTCTCTGATCTGAGCAATTCTTCATCACAGTCTATCATGAGTGATTTGTCAAATTCCCTCACTGGAATTGGATCCAACATCCACATCTTCACTTACCAGGAGCTCAAAGAGATCACACACAGCTTCAGCAAGAACAATTTCCTCGGCGAAGGTGGATTCGGAAAGGTTTACAAAGGTTTCATTGATGACAAGTTTAAGCCCAGGCTCGAGCCTCAGGTTGTTGCTGTTAAGGCCCTCAACTTGGATGGCAAACAAGGACACAGAGAGTGGTTGGCTGAAGTAATCTTCTTGGGGCAGTTGAAGCATCGCAATCTGGTTAACTTAATTGGATACTGCTGTGAAGATGAGCACAGGCTTCTTGTCTATGAATACATGGAAAGGGGCAATCTGGAAGAGAAGCTTTTCAAAGGGTATTTAGCAACGTTGCCATGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGACTTTGTTTCCTTCATGAAGAAGAAAAACCAGTCATATACAGAGATGTTAAAGCCTCAAACATTCTGTTAGACGCGGATTACAATGCGAAGCTCTCAGATTTTGGTTTAGCAATAGATGGACCAGAGGAAGATCAAACACATGTTACAACTCGTGTTATGGGTACCCGCGGTTATGCTGCTCCTGAGTATATCATGACAGGGCATTTGACAACGATGAGCGATGTGTATAGCTATGGAGTTGTTCTGTTAGAGCTACTAACAGGAAGAAAATCAGTGGACAAGAAACGAGCAAGCAGAGAGCAAAATTTGGTAGAGTGGGCAAGGCCAATGCTGAAGGATTCTCTTAAACTGGAGAGAATAATAGACCCAAGACTCGAGGGTCAGTACTCAACACAAGCTGCTAGAAAGTTAGCATGTTTGGCTTACCAATGCCTTAGCCACCATGCAAAGAACAGGCCTTCAATGCGAACCGTCGTTAAGACCTTGGAGCCTCTCATGGAACTCAACGATATCCCAATTGGTCATTTTGTTTATGTGGCCCCCACCGAACAAGTGGTTGTTGTAACCGACTGTACTTTTTATAACAACGCCACCAATGTTAGTGTTAATAATAATAGAGAGGGTGAGGAGAAAAAAGAGAAGGAGAAAGGTCGCAATAATAATAATGTAAAGAAGGAGCGAAAAAGTCGCAGCCGTAGGTGTAGGGTTAAGCCAATGAGGTCTCGTGCTGTTTACTCTGACACTGCTCTGTATAAGACTCTTGCTACCAGTCCCTATTTTCCCAAACAAGGACCAGAGACACAACATAATTGTGATGGAAATAATGGTTCAATATTGGCAATTTAG 1452 0.4277 MPYQKRVMWKSFIVGCFKDKHVSNSSLDDTQHTSASKKTFSRRISLSDLSNSSSQSIMSDLSNSLTGIGSNIHIFTYQELKEITHSFSKNNFLGEGGFGKVYKGFIDDKFKPRLEPQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRNLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLCFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEEDQTHVTTRVMGTRGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGRKSVDKKRASREQNLVEWARPMLKDSLKLERIIDPRLEGQYSTQAARKLACLAYQCLSHHAKNRPSMRTVVKTLEPLMELNDIPIGHFVYVAPTEQVVVVTDCTFYNNATNVSVNNNREGEEKKEKEKGRNNNNVKKERKSRSRRCRVKPMRSRAVYSDTALYKTLATSPYFPKQGPETQHNCDGNNGSILAI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91247g00001 483 Pfam Protein tyrosine and serine/threonine kinase 90 364 IPR001245 GO:0004672|GO:0006468
Stsc91247g00001 483 PANTHER OS01G0588500 PROTEIN-RELATED 43 367 - -
Stsc91247g00001 483 Gene3D Transferase(Phosphotransferase) domain 1 170 374 - -
Stsc91247g00001 483 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 170 373 - -
Stsc91247g00001 483 Gene3D Phosphorylase Kinase; domain 1 37 169 - -
Stsc91247g00001 483 SUPERFAMILY Protein kinase-like (PK-like) 69 365 IPR011009 -
Stsc91247g00001 483 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91247g00001 483 MobiDBLite consensus disorder prediction 406 440 - -
Stsc91247g00001 483 CDD STKc_IRAK 93 367 - -
Stsc91247g00001 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Stsc91247g00001 483 MobiDBLite consensus disorder prediction 407 426 - -
Stsc91247g00001 483 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Stsc91247g00001 483 FunFam Serine/threonine-protein kinase BIK1 51 169 - -
Stsc91247g00001 483 MobiDBLite consensus disorder prediction 463 483 - -
Stsc91247g00001 483 SMART serkin_6 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91247g00001 Stsc-Chr91247 17420 20757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91247g00001 71 368 Receptor kinase-like Gene Family AT3G58690 51.316 2.08e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc91247g00001 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91247g00001 - - gmx:100790454 629.017