Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91245g00002 ATGGAATTTGAACCACTATGTGAGTGCTGTGGGGTTACAAGAGCCGTTGTTTATTGCAAATCAGATTCTGCACGTTTGTGCATGGATTGTGATGTGTCCGTACACAGTGCAAATTGTTTATCAATGAGGCACCTTCGTTCTCTCTTATGTGACAAGTGCAATTCAGAAGCCTCAATTGTCCATTGCATTGAGGAGAAGTTGTCATTTTGCCATGCTTGTTGTGAATTGAACCAAAATGGGTGTTCAATTTTGGGACACAGGCTTCAATCCTTGAATTGTTACAAGGGTTGTCCCAATTTCACTGATATGCCTGGCTTGTTCTCATTTGTTCTTGATGATTATTCCTGTTCAAATGGTTTCGACAATAATGGTGGAGGCAGCGGCGGATCAATTGATACATCATTGGCTAGAAGTGAAAGCTGCAACAGCAAGTGTTTGGAGCAGCTTGTTAACACAATTAACAATGATGGCAATTTCAATTTTGTTAATGAAAAGTTGAGGGAAACGGAACCATGTGTCAAATTTGAGCCTTGGATGGAGCAATCTTCGGCTTCTGGCATTCCTCAACCAAATGCAAACTACATGTCAATGCCATACTCCGGCGACCAAGGAATTTTCTTACCAAACCTGCCAAAGGAATGTCCGAATTTGAACGATCTAGGAATTCATGATGGTGATGGTCTCAACATGGATAATTTTCAATTTAACTTTGAAAACACTGATGAAATATTTGACTATTCTCAAATTGACACAACATACCAACTTGTTAATGGAGGAATGGACTGTGAATTAATGGGAAATAACATATCTGCAACAGAATCTAATGCACTATTCGACAGTACAATAGAGGGTGGTGGATCAGCTAGTGAGATGTATGGAATCAACAGCAATGAGAATTGTGTGCTTATGCCTCCTAGCTGCAATGAAAACAGCAATCTGGGATTCTCAAAGGGTAGTCAGCTCTATTCAAGCATGTCACTTCCGCTTCCTAACAGCGATGGTGAATTTGGTGCTACAGATTATCAAGATTCTGGTTTGTCAACAATGTTCCCAATGAGCGAATTGTCTATGGAACCGATCTCGAAAGGTACATGCCAACAAGCCCGGGAGAAAGCAAAATTGAGGCTGAATGAGAAAAAGAAAAATCTAAGGTTCGGGAAGCAAATAAGATATGAATCGCGCAAAGCAAGGGCCGATTCAAGAAGACGTGTGAAAGGTAGATTTGTAAAAGCAGGTGAAGCATATGATTATGATCCTAAGAAGACAAGGAGCCTCTAA 1278 0.4053 MEFEPLCECCGVTRAVVYCKSDSARLCMDCDVSVHSANCLSMRHLRSLLCDKCNSEASIVHCIEEKLSFCHACCELNQNGCSILGHRLQSLNCYKGCPNFTDMPGLFSFVLDDYSCSNGFDNNGGGSGGSIDTSLARSESCNSKCLEQLVNTINNDGNFNFVNEKLRETEPCVKFEPWMEQSSASGIPQPNANYMSMPYSGDQGIFLPNLPKECPNLNDLGIHDGDGLNMDNFQFNFENTDEIFDYSQIDTTYQLVNGGMDCELMGNNISATESNALFDSTIEGGGSASEMYGINSNENCVLMPPSCNENSNLGFSKGSQLYSSMSLPLPNSDGEFGATDYQDSGLSTMFPMSELSMEPISKGTCQQAREKAKLRLNEKKKNLRFGKQIRYESRKARADSRRRVKGRFVKAGEAYDYDPKKTRSL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91245g00002 425 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 414 - -
Stsc91245g00002 425 SMART bboxneu5 2 49 IPR000315 GO:0008270
Stsc91245g00002 425 CDD Bbox1_BBX-like 6 49 - -
Stsc91245g00002 425 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Stsc91245g00002 425 ProSiteProfiles Zinc finger B-box type profile. 2 49 IPR000315 GO:0008270
Stsc91245g00002 425 Pfam CCT motif 369 411 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91245g00002 Stsc-Chr91245 10593 12783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91245g00002 6 419 C2C2-CO-like Transcription Factor Family AT5G48250 31.293 2.04e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc91245g00002 CCT 5.9e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91245g00002 - - ahf:112737556 796.578