Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91239g00002 ATGGAGATATCATTGTTAAAGATGCTCGTTAATGGAATATCCTCGTTTCTGAATTTATCATTTTCTGGAAACATCAACTCAGTACCCATCTCAAAGTATTACCAAAAGGCAGAGGAGATACTTAAGTTGTTGAAGCCAATTATTGATGCAATTGCTCATTCTGAGTTAGCATCTGATGAAGTGCTTAGTATGATATTTGAAGAACTTGGTCATGCAATTGATGAATTAAGGGAGCATATTGAGAACTGGCACCTATTGTCCAGCAAAGTTTACTTTGCTATGCAAGTTGAACCCTTGATATCTAGGATAAGAACTTCGGGGCTCAATATTTTCCAGCAGCTGAATGTTTCTCAGCAATGTCTCCCTGATGAATTGAGTTCTGATCATCTTGAGCATTGTGTTCAGAAGCTTAAGCATTTGGGACATGTAGAAGTATCAGTAGTCATTAAGGAAGCCATTACTGAACAACGGGAAGGTGCAGGACCGAGTTCAGAGGTCCTGGCAAAAATTTCTGATAGCCTAGGCCTAAAGTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAGCAAACTGAAAGGACTGCAGAAGCTGAATATATTGATCAAATGATTGCTATTGTGACGCGTATGCATGAGCGGCTTATTATGCTTAAGCAAGCTGAGAGTAGCAGCCCAGTTCCAGTACCTGCCGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCATCAGGACAAACCTATGAGCGGGCTTTCATTAGGAACTGGATTGATCTTGGACTTACTGTTTGTCCAAAGACTCGGCAGGCACTAGCTCATACCAACCTCATACCTAACTACACTGTAAAAGCACTAATTGCAACTTGGTGTGAGTCAAACAATGTGAAACTGGTTGAGCCCCCAAAGTCCACTAATTTAAATCAAGCATCTGTCATTAAGGGGTATATGGAGTCTGGTACAACCAGGGACTCGCCTGTCTTTTCTCATTCCAGGGGCAACCAGCCATCCTCGCCTGAGTCAGCGCGTTCTCGTTCTTTTAATTCCCCAGGTAATAACCTAACTTCTGTTGGAATTCAGAGAGAGGCAGCATCGCCATTGCACCCGCGTTCAATTTCGGAAGGATCCTTAAGTGGTATGGTTAATGGGCAGCATATGGATCTTGCCGGAGTGGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGTCGGCCAACCCTCAATGTCACCATCTAAAAGGGAATCTTCTGGTGCCTTTAACCCTGCCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCATGTTCGAACTATTTCTGAGTCCAGTGCACTATCTAGTGGAAATTTCCCCCAAGAAACACCAGGTGATGATAATAGTTCTCATCAGCTGTCAAGCAGTCCAGCTTACAGTAGAGATGTTTCAGGTGAATTAAATCCAGGCCCAGATTCTGCTGGTGCTGCTACCATTCCATCTTCACATAGAGAGCCAGAGTTCCCACCCCGATTGGAGACAAGGTCCCGAACATCTTTGTGGCAGCGGCCATCACAGAGGCTTGTTCCTAGGATGGTATCCTCCCCTAATGTTGAAACTAGAGCTGATCTTTCTGCCATTGAATCCCAGGTTCGGACTTTGGTTGAGGGCTTGAAGAGCACTGATATTGATACTCAGAGAGAGGCGACAGTAGAAATTCGGCTTCTTGCCAAGCATAATATGGATAATCGAATTGCAATCGCAAACTGTGGAGCCATTATCATATTAGTTGAGTTACTTAGATCACCAGATACAAGGATCCAGGAAAATGCTGTTACAGCACTACTGAACTTATCAATCAATGATAACAACAAAAGTGCAATAGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTAAGACAGGGAGCCCTGAAGCCAAGGAGAATTCTGCTGCCACTCTATTCAGCTTATCAGTGATTGAGGAAAACAAAATTACCATTGGTAGGTCGGGGGCTATTGGACCATTGGTTGATCTATTAGGGAATGGAACCCCTAGGGGTAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCCATATTTCATGAAAACAAGAATCGAATTGTGCAAGCTGGCGCCGTGAAGCACCTTGTAGAGTTAATGGACCCAGCTGCCGGAATGGTTGATAAAGCAGTGGCAGTCTTAGCAAATCTGGCCACAATTCAAGAAGGAAGAGTAGCAATTGGTCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTTGTCGAGTTGGGCTCTGCAAGAGGAAAAGAAAATGCAGCAGCAGCTCTTCTGCATCTTTGCTTACATAGCAACAGATTCTTAAGCATGGTGCTTCAGGAAGGAGCTGTCCCACCATTAGTCGCCTTATCACAGTCAGGTACCCCGAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAGAGACATAATGCGGGGAGGGGCTGA 2532 0.4487 MEISLLKMLVNGISSFLNLSFSGNINSVPISKYYQKAEEILKLLKPIIDAIAHSELASDEVLSMIFEELGHAIDELREHIENWHLLSSKVYFAMQVEPLISRIRTSGLNIFQQLNVSQQCLPDELSSDHLEHCVQKLKHLGHVEVSVVIKEAITEQREGAGPSSEVLAKISDSLGLKSNQEVLIEAVALEKLKENAEQTERTAEAEYIDQMIAIVTRMHERLIMLKQAESSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIRNWIDLGLTVCPKTRQALAHTNLIPNYTVKALIATWCESNNVKLVEPPKSTNLNQASVIKGYMESGTTRDSPVFSHSRGNQPSSPESARSRSFNSPGNNLTSVGIQREAASPLHPRSISEGSLSGMVNGQHMDLAGVGLDDRSASSDESSVDSVGQPSMSPSKRESSGAFNPAQAQAQAQAQAQAQAHVRTISESSALSSGNFPQETPGDDNSSHQLSSSPAYSRDVSGELNPGPDSAGAATIPSSHREPEFPPRLETRSRTSLWQRPSQRLVPRMVSSPNVETRADLSAIESQVRTLVEGLKSTDIDTQREATVEIRLLAKHNMDNRIAIANCGAIIILVELLRSPDTRIQENAVTALLNLSINDNNKSAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKITIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRVAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHNAGRG 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91239g00002 843 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Stsc91239g00002 843 MobiDBLite consensus disorder prediction 331 372 - -
Stsc91239g00002 843 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Stsc91239g00002 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Stsc91239g00002 843 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Stsc91239g00002 843 Gene3D - 535 840 IPR011989 -
Stsc91239g00002 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 313 IPR013083 -
Stsc91239g00002 843 Coils Coil 179 209 - -
Stsc91239g00002 843 SMART arm_5 672 712 IPR000225 GO:0005515
Stsc91239g00002 843 SMART arm_5 713 752 IPR000225 GO:0005515
Stsc91239g00002 843 SMART arm_5 753 793 IPR000225 GO:0005515
Stsc91239g00002 843 SMART arm_5 590 630 IPR000225 GO:0005515
Stsc91239g00002 843 SMART arm_5 631 671 IPR000225 GO:0005515
Stsc91239g00002 843 SMART arm_5 544 588 IPR000225 GO:0005515
Stsc91239g00002 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 765 IPR000225 GO:0005515
Stsc91239g00002 843 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Stsc91239g00002 843 PANTHER U BOX DOMAIN-CONTAINING 29 832 - -
Stsc91239g00002 843 CDD RING-Ubox_PUB 237 289 IPR045210 -
Stsc91239g00002 843 SUPERFAMILY RING/U-box 225 313 - -
Stsc91239g00002 843 MobiDBLite consensus disorder prediction 331 533 - -
Stsc91239g00002 843 SUPERFAMILY ARM repeat 559 833 IPR016024 -
Stsc91239g00002 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 683 725 IPR000225 GO:0005515
Stsc91239g00002 843 MobiDBLite consensus disorder prediction 414 492 - -
Stsc91239g00002 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 684 IPR000225 GO:0005515
Stsc91239g00002 843 FunFam RING-type E3 ubiquitin transferase 544 839 - -
Stsc91239g00002 843 Pfam Armadillo/beta-catenin-like repeat 592 629 IPR000225 GO:0005515
Stsc91239g00002 843 Pfam Armadillo/beta-catenin-like repeat 631 670 IPR000225 GO:0005515
Stsc91239g00002 843 Pfam Armadillo/beta-catenin-like repeat 674 711 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91239g00002 Stsc-Chr91239 10536 17426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91239g00002 196 843 U-box Gene Family AT2G23140 61.069 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91239g00002 - - gmx:100813786 1311.98