Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91234g00003 ATGAGAGATGCAGATGGTAAATCAAAGTGTTTTGGGTTTGTTAATTTTGAAAACCCAGAAGATGCTGCCAAAGCTGTTGAGGCACTCAATGGAAAGAAAATTGATGACAAAGAATGGTATGTTGGAAAGGCCCAGAAAAAATCTGAGCGAGAGAATGAACTGAGAAGACGGTTTGAGCAAACTGTTAAGGAATCGGTCGATAAATACCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACCATCAATGATGAAAAGCTTAGAGAACTCTTCTCCGAGTTTGGTTCAATAACCTCCTGCAAGGTGATGCGTGATCCAAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTACGGAGATGAACGGTAAAATGATTGCTGGGAAGCCTCTGTATGTCGCCCTTGCCCAGAGAAAGGAAGAGAGAAGAGCTAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCAATGACACCTTCTGTTGCACCTAGGATGCCACTTTATCCTCCTGGTGCTCCTGGTTTAGGGCAACAATTTTTGTATGGGCAAGGACCCCCAGCCATGATTTCCCCACAGGCTGGATTTGGTTACCAGCAGCAACTTGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATGCCTAGCTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCGCCCAGGTGGACGAAGGGGAGCTGGTCATGTGCAACAACCCCAGCAGCCAGTGCCAATGATGCAGCAGCAGTTGCTTCCAAGAGGACGCTACATGCGTTACCCCGGGGGTCGCAACATGCAAGATGTCCCACATCCTGGAGTTGCTGGAGGAATGTTGTCAGTCCCCTATGACATGGGTGGTCTTCCAATCCGTGATGGTGTAGGGCAGCCAGTCGGCATTCAGGCCTTGGCTACTGCTCTTGCAAATGCTCCTCCCGAACAGCAGAGGACTATGCTTGGTGAAGCTCTGTACCCGCTAGTGGACCAGCTGGAGCATGACGCAGCCGCTAAAGTTACCGGCATGCTGTTGGAGATGGATCAGCCAGAGGTATTGCACCTGATTGAATCACCAGATGCTCTCAAGGCGAAAGTTGCCGAAGCGATGGATGTGTTGAGAAATGTTTCTCAACAAGCCAACAGTCCTGCCGATCAACTAGCCTCACTCTCGCTCAATGAGAATCTTGTCTCTTAG 1221 0.4889 MRDADGKSKCFGFVNFENPEDAAKAVEALNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVAFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMISPQAGFGYQQQLVPGMRPGGAPMPSFFVPMVQQGQRPGGRRGAGHVQQPQQPVPMMQQQLLPRGRYMRYPGGRNMQDVPHPGVAGGMLSVPYDMGGLPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANSPADQLASLSLNENLVS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91234g00003 406 Pfam Poly-adenylate binding protein, unique domain 317 381 IPR002004 GO:0003723
Stsc91234g00003 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 142 IPR000504 GO:0003723
Stsc91234g00003 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 39 IPR000504 GO:0003723
Stsc91234g00003 406 FunFam Polyadenylate-binding protein 55 160 - -
Stsc91234g00003 406 FunFam Polyadenylate-binding protein 305 387 - -
Stsc91234g00003 406 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 309 386 IPR002004 GO:0003723
Stsc91234g00003 406 CDD RRM4_I_PABPs 71 149 - -
Stsc91234g00003 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Stsc91234g00003 406 SUPERFAMILY RNA-binding domain, RBD 1 153 IPR035979 GO:0003676
Stsc91234g00003 406 Gene3D - 1 66 IPR012677 -
Stsc91234g00003 406 PANTHER RNA BINDING PROTEIN 1 180 - -
Stsc91234g00003 406 SMART rrm1_1 73 145 IPR000504 GO:0003723
Stsc91234g00003 406 SMART poly_2 321 384 IPR002004 GO:0003723
Stsc91234g00003 406 Gene3D - 306 388 - -
Stsc91234g00003 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Stsc91234g00003 406 Gene3D - 68 170 IPR012677 -
Stsc91234g00003 406 SUPERFAMILY PABC (PABP) domain 251 398 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91234g00003 Stsc-Chr91234 15277 17964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91234g00003 1 404 Eukaryotic Initiation Factors Gene Family AT2G23350 67.857 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91234g00003 K13126 - gmx:100784442 705.671