Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91234g00001 ATGAAGGTGCATCAATTGACACGTGGACTATGGGAGCATGAACCTTCCCTCACGCTTGGATGCAAAAGATTACGCCCTCTTGCTCCTAAGCTTAGCAGTTCCTCCTCTTCTTCTAATAATAATAATTCTACTTCTCCTACTTCTTCTTCTTCTCTTGCTTCTTTTGATATCAAGAGCTTCATTAGACCTGAAAGTAGTAAACTTATTGGATCATCATCCTCTGATGAAGATAACAACAACAACAATAACATCATTACTAAGAGGGATCCACCTTCACCACCAAGGAGCCAGGTGGAAACACATCCTGGAGGAACAAGGTGGAACCCTACTCAAGAACAAATAGGGATACTGGAGATGTTGTATAGAGGGGGAATGAGAACACCAAATGCTCAACAAATAGAACAGATAACTACTCAGTTAGGGAAATACGGCAAGATTGAAGGCAAAAATGTTTTTTATTGGTTCCAAAACCACAAAGCACGTGAGAGACAAAAGCAGAAACGTAACAGCCTTGGACTTTGTCATACCCCTAGAACCCCGCCTGCCGTCGCCACCACCGTTGCTACCGCAACCACAACAATAGTTTCGTCACCCACCTTTGCTGCTAGCTTAAGTTTTGAGACCTCAAGGGGAGAAGTAATTGAAAGAGATCATGAAGATAGTCCTTACAAGAAGTGTAGGAGTTGGGTGTTTGAGTATATGGAAGATCAAAGCTGGTCATCATCATCATCATCTAGCAAAGAGGAAGAACATAAAACCCTAGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 795 0.4277 MKVHQLTRGLWEHEPSLTLGCKRLRPLAPKLSSSSSSSNNNNSTSPTSSSSLASFDIKSFIRPESSKLIGSSSSDEDNNNNNNIITKRDPPSPPRSQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLCHTPRTPPAVATTVATATTTIVSSPTFAASLSFETSRGEVIERDHEDSPYKKCRSWVFEYMEDQSWSSSSSSSKEEEHKTLELFPLHPEGR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91234g00001 264 ProSiteProfiles 'Homeobox' domain profile. 100 165 IPR001356 GO:0003677
Stsc91234g00001 264 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 264 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Stsc91234g00001 264 CDD homeodomain 105 166 IPR001356 GO:0003677
Stsc91234g00001 264 MobiDBLite consensus disorder prediction 235 264 - -
Stsc91234g00001 264 MobiDBLite consensus disorder prediction 29 52 - -
Stsc91234g00001 264 Pfam Homeodomain 105 164 IPR001356 GO:0003677
Stsc91234g00001 264 Gene3D - 104 171 - -
Stsc91234g00001 264 SMART HOX_1 102 169 IPR001356 GO:0003677
Stsc91234g00001 264 MobiDBLite consensus disorder prediction 245 264 - -
Stsc91234g00001 264 MobiDBLite consensus disorder prediction 67 111 - -
Stsc91234g00001 264 SUPERFAMILY Homeodomain-like 100 170 IPR009057 -
Stsc91234g00001 264 MobiDBLite consensus disorder prediction 67 90 - -
Stsc91234g00001 264 FunFam WUSCHEL-related homeobox 4 104 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91234g00001 Stsc-Chr91234 6468 8688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91234g00001 1 171 Wox Gene Family AT1G46480 61.017 5.67e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc91234g00001 Homeodomain 9.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91234g00001 - - aip:107605651 405.986