Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91232g00001 ATGTTACTGCGATTCCTTTTTGTGATGCTTGAGGTTGTAACTAGTGGCCTTCTGGTTCAAACCCAGTTACAATCAGGATTCATAAGCATAGATTGTGGGCTACCTGAAGGAAAGGACTATACTGAGAAGACAACAGGAATTAATTACATTTCAGATGCTAATTTCATTGATTCAGGCGTGAGCAAAACGGTGTCCAATGAAGATAAGATTAGTCACCAACAACAACTTAGTTACGTGAGGAGCTTTCCCAACGGTATGAGAAACTGTTACGAAATCAGTGTGAAAAGTGCCACTAAATATTTAATCAGAGCAAGTTTTCTGTACGGAAACTATGACGGTCTAAATGAGCTTCCACAATTTGATATTCATCTTGGAACTAATTTGTGGGACACAGTGAAAATAAGCAATCAATCACAGAGCATTTACAGAGAACTGATGCACACTCCCACACTGAATTATGTACACATATGTCTGGTTAACACAGGCAAAGGGGTTCCCTTTATTTCTGCCATAGAGTTCAGGAATATGGACTTCAACAATGTTTATCAAACTTCCGGAGCTACAACATTGGCACGTTTGGTTGGTGTAGATTTTGGTTCATTAACCAATGTAACATACAGGTACATAGATGATTTGCATGATCGTTTATGGGAGCCTTATTCCAACGAGCATTGGACACAGCTAAACACCATTTTCAGCGATGATCTGAAGAACAATGATTGGGAACTGCCAAAATCAGTAATTAAGACTGCAGCTGCACCAAAAAATGCTAAGGGTTTCTTAAATTTCTACTTTGATGCACTTAATGAAACTGCAACACACCAACTATGCTATTTTTATCTGCACTTTGCTGAGGTTCAAAAGCTGGCACCAAATGAAACTAGAGAATTCAACATCACCATCAATGGAAACTCCTTTTCTGATCTACTTCAACCCCCAAACTCTATATATACCATATATTCTGGTTCATCCTATTATGTGTTCGTTAAGAATAACAATATTTCACTTGTTCAGACAAAAGCCTCTACCCTTCCACCCATCATCAATGCTCTTGAGATTTATCAAGTTAAAGATTTCTCACAATTGGAAACTCAACCAGATGATGTTGATGCTGTCACAAATATCAAGAAAGTTTACAGGGTGACCCATAACTGGCAAGGTGATCCATGTGCTCCTGTGGAATTCATGTGGGAGGGTCTAAACTGTAATTTCAGTGGCACCCTAAGAATCACATCCTTGAATTTATCTTCAAGAGGAATCATTGGACACATAGCAATCTATATCTCAAAGCTTACTGAGTTAGAGTCCTTGGATTTATCAAATAATAGCTTAAGCGGGAACATACCTGTTTTTCTAGTAGAAAACCTACCATCTCTTAAAGTCTTAAACTTGCAGAACAATAACCTCACAGGTCTAATTCCAAAAGCACTTCTCCAACGGTCAAGTGAAGGTATACTATCACTAAGGTTGGAGCAAAATCCAAATCTATGTGAATCTGGTCCTTGTGAGCAACAGACAAAGGATAAAAGCAAGGAAAACAATTCAGTTGTTTATGTACTAGCATCTGTTTCTGCTTTTTTGATGCTCTTACTGGTAGTTCTTGCTGCAGCTAACATCATTTACATTAAAAAGAGAAAGCCAGATGATGTCCCCTTTAATATGAAGTCCGGTGATCCGTTGGAATCTAAGCGGCGACAATATTCATTCGATGAAGTTGTTAACATGACCAATAACTTCGAGAGAATTCTGGGTAGAGGTGGATTTGGAACAGTTTACTATGGCATCATTGATGACATTCCGGTAGCTGTCAAAATGCTTTTGCAATCATCGGTACAAGGACATCAACAATTTCTAGCAGAGGTTAAATTTCTTATGAGGGTTCACCACAGAAACCTGACTTCTCTCATTGGATACTGCAATGAAGACAACAACATAGGCCTCATCTATGAATATATGGCAAATGGGAACCTAAATGAACATCTTTTAGGAAAAACCAACAGGACAAAGTTCTTGACTTGGGAGGATAGACTCCAAATAGCAGTGGATGTAGCCCAAGGATTGGAGTATCTGCATAATGGTTGCAAGCCACCAATAATCCACAGAGATATAAAATGTGCAAACATTTTGTTAAATGAAACCTTTCAAGCAAAATTGGCTGATTTAGGGTTGTCCAAAAGCTTCATCAAAAGCGGAGACACACACGTGTCCACTGTTGTTGCTGGAACTCTTGGCTACCTTGATCCAGAGTACGAAACATCAAAGAAATTAACAGAGAAAAGTGACGTGTATAGTTTTGGAGTAGTACTCTTAAAACTAATAACAGGTCAAGCAACAACATTATCAAACAATGCTCACATAAGTGAGTGGGTGGGTTCAGTGGTTGCAAGAGGGGACATAGAAGGTATTGTAGAGCCAAGATTAGAAAGAGATTTCGACATTTATTCAGCATGGAAAGCAGTTGAAATAGCAATGGCATGTGTCTCCATTACTTCTAAAGAAAGGCCCTGCATGAGAGACGTTGTGGTGGAGCTAAAGAAGTGTTTGGCCGTGGAATCAGCTAGAAAAAATGTTGGAGCCAAAGATTCAAATGAGTTGCTCACCATGAATCTAGTTACTGAAATTAGTCCCGTAGCTAGGTAG 2640 0.389 MLLRFLFVMLEVVTSGLLVQTQLQSGFISIDCGLPEGKDYTEKTTGINYISDANFIDSGVSKTVSNEDKISHQQQLSYVRSFPNGMRNCYEISVKSATKYLIRASFLYGNYDGLNELPQFDIHLGTNLWDTVKISNQSQSIYRELMHTPTLNYVHICLVNTGKGVPFISAIEFRNMDFNNVYQTSGATTLARLVGVDFGSLTNVTYRYIDDLHDRLWEPYSNEHWTQLNTIFSDDLKNNDWELPKSVIKTAAAPKNAKGFLNFYFDALNETATHQLCYFYLHFAEVQKLAPNETREFNITINGNSFSDLLQPPNSIYTIYSGSSYYVFVKNNNISLVQTKASTLPPIINALEIYQVKDFSQLETQPDDVDAVTNIKKVYRVTHNWQGDPCAPVEFMWEGLNCNFSGTLRITSLNLSSRGIIGHIAIYISKLTELESLDLSNNSLSGNIPVFLVENLPSLKVLNLQNNNLTGLIPKALLQRSSEGILSLRLEQNPNLCESGPCEQQTKDKSKENNSVVYVLASVSAFLMLLLVVLAAANIIYIKKRKPDDVPFNMKSGDPLESKRRQYSFDEVVNMTNNFERILGRGGFGTVYYGIIDDIPVAVKMLLQSSVQGHQQFLAEVKFLMRVHHRNLTSLIGYCNEDNNIGLIYEYMANGNLNEHLLGKTNRTKFLTWEDRLQIAVDVAQGLEYLHNGCKPPIIHRDIKCANILLNETFQAKLADLGLSKSFIKSGDTHVSTVVAGTLGYLDPEYETSKKLTEKSDVYSFGVVLLKLITGQATTLSNNAHISEWVGSVVARGDIEGIVEPRLERDFDIYSAWKAVEIAMACVSITSKERPCMRDVVVELKKCLAVESARKNVGAKDSNELLTMNLVTEISPVAR 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91232g00001 879 SMART LRR_typ_2 431 455 IPR003591 -
Stsc91232g00001 879 SMART LRR_typ_2 456 479 IPR003591 -
Stsc91232g00001 879 Gene3D Transferase(Phosphotransferase) domain 1 652 870 - -
Stsc91232g00001 879 SUPERFAMILY RNI-like 396 499 - -
Stsc91232g00001 879 Pfam Protein tyrosine and serine/threonine kinase 579 843 IPR001245 GO:0004672|GO:0006468
Stsc91232g00001 879 Gene3D Ribonuclease Inhibitor 370 488 IPR032675 -
Stsc91232g00001 879 Gene3D Phosphorylase Kinase; domain 1 559 651 - -
Stsc91232g00001 879 PANTHER OS07G0107800 PROTEIN-RELATED 28 851 - -
Stsc91232g00001 879 FunFam Leucine-rich repeat receptor-like kinase 367 499 - -
Stsc91232g00001 879 FunFam Leucine-rich repeat receptor-like protein kinase 555 651 - -
Stsc91232g00001 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Stsc91232g00001 879 ProSiteProfiles Protein kinase domain profile. 577 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91232g00001 879 ProSiteProfiles Leucine-rich repeat profile. 458 479 IPR001611 GO:0005515
Stsc91232g00001 879 Pfam Malectin-like domain 30 356 IPR024788 -
Stsc91232g00001 879 CDD STKc_IRAK 583 846 - -
Stsc91232g00001 879 ProSitePatterns Protein kinases ATP-binding region signature. 583 604 IPR017441 GO:0005524
Stsc91232g00001 879 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 652 857 - -
Stsc91232g00001 879 SMART serkin_6 577 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91232g00001 879 SUPERFAMILY Protein kinase-like (PK-like) 560 844 IPR011009 -
Stsc91232g00001 879 PRINTS Leucine-rich repeat signature 434 447 - -
Stsc91232g00001 879 PRINTS Leucine-rich repeat signature 456 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91232g00001 Stsc-Chr91232 4298 10029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91232g00001 5 879 Receptor kinase-like Gene Family AT1G51800 45.495 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc91232g00001 Malectin_like 7.7e-100 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91232g00001 - - gmx:100779474 991.49