Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91229g00008 ATGAGATTGTCTTATAGCCCGGCTGCCCAGTTTTTCCTTTTCTTAGTCCAGTGGACTGATTGTCACCTCGCCGGAGCGTTAGGATTGCTAAGAGTTCTCATCTACAAGGTATTTGAAATGTTGCAGACATATGAGGATGGGAAGACAACCATGTCGGTTTATGAAAGAAAAGCTAGTTTGAAGGAGTTCTATAGTGTGATCTTTCCTTCTTTATTACAACTTCAGAGAGGAATCACTGATGTAGAAGACAGGAAACAAAAAGATCTATGTGCTATGAAGTACAGGCTGAGAGATACGGCAGGAAAAGGGAAATTATCTGAGATTGATATCGAAAGAGAAGAAGAATGTGGTATTTGCTTGGAGGTGAACAGCAAGGTCGTGTTGCCGAATTGCTACCATTCGATGTGTATGAAATGCTACCGAGACTGGCGCGTGCGATCGCAGTCTTGCCCTTTCTGCCGGGAAAGCCTTAAGAGAGTTAACTCCGGCGACCTTTGGATATATATGAGCAACAAGGAAATGGATGACTTGGCTTCAATCAACAAGGAGAACTTAAAGAGGCTGTTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATGTTCTTGACTTATCCTCCACATCGTTTCTGA 639 0.4257 MRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVFEMLQTYEDGKTTMSVYERKASLKEFYSVIFPSLLQLQRGITDVEDRKQKDLCAMKYRLRDTAGKGKLSEIDIEREEECGICLEVNSKVVLPNCYHSMCMKCYRDWRVRSQSCPFCRESLKRVNSGDLWIYMSNKEMDDLASINKENLKRLFMYIDKLPLIVPDPMFLTYPPHRF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91229g00008 212 PANTHER RING FINGER PROTEIN 41, 151 1 205 - -
Stsc91229g00008 212 ProSiteProfiles Zinc finger RING-type profile. 116 154 IPR001841 -
Stsc91229g00008 212 SUPERFAMILY RING/U-box 105 159 - -
Stsc91229g00008 212 Pfam Zinc finger, C3HC4 type (RING finger) 113 159 - -
Stsc91229g00008 212 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Stsc91229g00008 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 163 IPR013083 -
Stsc91229g00008 212 SMART ring_2 116 153 IPR001841 -
Stsc91229g00008 212 FunFam RING/U-box superfamily protein 96 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91229g00008 Stsc-Chr91229 23597 25173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91229g00008 60 158 C3H Transcription Factor Family AT5G01960 28.846 9.18e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91229g00008 K25840 - gmx:100819267 354.369