Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91229g00007 ATGGGAAAGTCTTTCAAGGATTCACTCAAAGCACTTGAAGCTGACATACACTATGCAAATACTCTAGCTTCTGATTATCCGAGGGAATACGATGGCGCCACCTTACAAATGAGATTGTCTTATAGCCCGGCTGCCCAGTTTTTCCTTTTCTTAGTCCAGTGGACTGATTGTCACCTCGCCGGAGCGTTAGGATTGCTAAGAGTTCTCATCTACAAGACATATGAGGATGGGAAGACAACCATGTCGGTTTATGAAAGAAAAGCTAGTTTGAAGGAGTTCTATAGTGTGATCTTTCCTTCTTTATTACAACTTCAGAGAGGAATCACTGATGTAGAAGACAGGAAACAAAAAGATCTATGTGCTATGAAGTACAGGCTGAGAGATACGGCAGGAAAAGGGAAATTATCTGAGATTGATATCGAAAGAGAAGAAGAATGTGGTATTTGCTTGGAGGTGAACAGCAAGGTCGTGTTGCCGAATTGCTACCATTCGATGTGTATGAAATGCTACCGAGACTGGCGCGTGCGATCGCAGTCTTGCCCTTTCTGCCGGGAAAGCCTTAAGAGAGTTAACTCCGGCGACCTTTGGATATATATGAGCAACAAGGAAATGGATGACTTGGCTTCAATCAACAAGGAGAACTTAAAGAGGCTGTTTATGTACATTGACAAGTTACCTCTAATTGTGCCAGATCCTATGTTCTTGACTTATCCTCCACATCGTTTCTGA 729 0.428 MGKSFKDSLKALEADIHYANTLASDYPREYDGATLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKTYEDGKTTMSVYERKASLKEFYSVIFPSLLQLQRGITDVEDRKQKDLCAMKYRLRDTAGKGKLSEIDIEREEECGICLEVNSKVVLPNCYHSMCMKCYRDWRVRSQSCPFCRESLKRVNSGDLWIYMSNKEMDDLASINKENLKRLFMYIDKLPLIVPDPMFLTYPPHRF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91229g00007 242 SMART ring_2 146 183 IPR001841 -
Stsc91229g00007 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Stsc91229g00007 242 PANTHER RING FINGER PROTEIN 41, 151 3 235 - -
Stsc91229g00007 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Stsc91229g00007 242 FunFam RING/U-box superfamily protein 127 193 - -
Stsc91229g00007 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Stsc91229g00007 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 193 IPR013083 -
Stsc91229g00007 242 SUPERFAMILY RING/U-box 135 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91229g00007 Stsc-Chr91229 23597 26626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91229g00007 90 188 C3H Transcription Factor Family AT5G01960 28.846 7.39e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91229g00007 K25840 - pop:7466068 419.853