Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91229g00002 ATGGCTGCTGCTCTTGAGGGTGGAGCTTATCTCTCTTCCTTTGTTGATGCTGTTTTGAACAAGCTGTCTTCGCTCGATGTCAACACAACTCCAATGGCAAGCAAGCTAGCTGACCAGAATTTGCTTCGGAATCTGAAGCGAAGTCTCCAGGTCGTTCGCCCCGTTCTTGATGATGCTGAGCAGAAGCAGATCAAAGGTGACCAAGAAGTCAAGAAGTGGCTTGTTGACCTCCAAGATGCTCTCTATATGACTGATGACTTGCTCGATGAACTCTCCACTAAAGCTGCCACTGCTACTCCCACTCAAACGGATCCAGGTAATTATTCTTCCTGGTGTAGCTCTGTTGTTGATTCAATCTTGGGAGATAGTGATGTGATGATAAATAGCATGCAATACATAGTTGATAAACTGGAGTCTATTGTTGAAGAGAAAAATGGTCTTGGTTTAAAAGAAAAGCCTGTCAAAGGTCTAGAGGACATGTCATGGAGGATTCAATCGTCTTTGGTTGGAAGTTCTGACATAATTGGTAGGGATAATGACAAGGAAGCCATCATAGAATTGTTGTTAGATGAGACTTGTGATGCTAAGATATCTGTGATCCCCATTGTAGGCATGGGAGGAGTTGGAAAAACTACCTTAGCTCAATTGGTGTACAATGACGCCAAAGTGGAGGGAAAATTTGACATTAGAGCATGGGTGTGTGTTTCCGAGCAATTTGACATTGTTAAGTTAATGGAGAAGAAATTCTTGATTGTTTTGGATGACATGTGGATTGATAATTCCAATTCCAGACAGTGGAAAACCCTTCAGAAGCCTTTTCAATATGGAAAAAAGGGAAGCAAGGTTCTTATAACAACTCGAAATGATACTGCTGCTGATGTAGTGAGAACTATGAAGGCATACCACCTCAGTTTATTGTCGGAGAAAGATTCTTGGTCACTTTTTGCAAAACGGGTTTCCCTTTCTCCTGAATCTAAGGAGTATTCAACTCTGGAACCTGTTGGTCGAGAACTTGTCAAAAAGTGCAACGGGCTACCTTTGGCTGTAGAGTCACTTGCTGCCTTATTAAGGACAAACTATGATGAAAGGGATTGGGATAATGTATTGAAAAGTGAACTTTGGGAAGTGTTTGAAGAACAGAATGATGAGATTATTCCTGCGTTAAGCATGAGCTATCATTATCTTCCTTCAAATCTAAAGCGCTGCTTTGTTTACTGTTCTTTGTTCCCGAAAGACTATCTATTTGATAAAGATGAGCTTGTCTTGCTATGGATGGTAGAAGAGCTTTTACAGCCAGATGGAAAAAAGGATCTAGAAGAAATTGGTTGTCAATGTTTCAATCAATTAATTGCAAGGTCCTTTTTTCAGTCCTCTAGTACTTATAAAAGCTTCTATGTCATTCACGATCTCATGCATGATGTGGCAACAACTCATGCCGGAGAATTCTACTTTAGAGCGGAAAAACATGAACAAGATGTCAGAATCAGCAATAAAACTCGTCATGTATTGCATAATGCAAGAGGAAATTTTCCCTTCTCACAGCTTGTGGCATCTTGTGGCGAGGTAAAAGATGGAAGGACATTTCTTGAAATAAATTTGGGTCGAAAGGATCCTTTCAATATGGAAAATGCTCCTCATATCTTTTTATCACAGTTGAAGTTGTTAAGAGTTTTGTCATTTAATACCTTTCGTCTTGAGTCGCTACCAGATTCAATAGGTAACTTGATCCATTTGCGATATTTGGATCTCTCAGATACATGGATAGAGACATTGCCTGAGGAATTGTGTTATTTGTACAATCTCCAGACATTGAAGTTGAATAACTGTCAACATCTGAAGAAGCTACCCCTTAATATGCAAGATCTAAAAAATCTACGCCATCTTGATATTGAAGGAGCTGGGATTGAGGAGATGCCAAAAGGAATGAGCAAGTTGAAGGATTTGCACTTTTTAAGTGACTACGTTGTCGGCAAGCATGCAGATAATGGAATTAAAGAACTAGGAGCACTTACAAATATTCATGAGTCACTTCGCATTTGCCAACTAGAGAATATCATGGATGGTGCTCAAGCTTTGGAGGCAAGAATTGCTGATAAGAAGCACATTACGGGTCTTCATTTGAAGTGGTCCTACAACCCCTGCTATATTGATGATTCTCAAGATATACTGAAAAATTTAAGGCCTCACACAAACTTGAGAAAGCTATCAATCAATGAGTACAAGGGTCTAGCATTTCCAAATTGGTTAGGACATTCTTCCTACAAAAACATGACCAAACTGTACTTGTATGGCTGCAGCAACTGTTTAGAGCTTCCTTCACTTGGGCAGCTACCCTCTTTGAAGCGCTTGCGACTGTCCAACTTTTACAGGCTTCAACGCGTTGGTGCCAAGTTTTACAAAGAGGATGGATCTTCTTCTGGTGGGGCAGCCTTTCCAGTGCTTGAGTTTTTATGGAATGGATTGTTGAGAGGAGTGGCTTTCAGTTTCAAATGCTTTTCCTCTGCTTAG 2508 0.4035 MAAALEGGAYLSSFVDAVLNKLSSLDVNTTPMASKLADQNLLRNLKRSLQVVRPVLDDAEQKQIKGDQEVKKWLVDLQDALYMTDDLLDELSTKAATATPTQTDPGNYSSWCSSVVDSILGDSDVMINSMQYIVDKLESIVEEKNGLGLKEKPVKGLEDMSWRIQSSLVGSSDIIGRDNDKEAIIELLLDETCDAKISVIPIVGMGGVGKTTLAQLVYNDAKVEGKFDIRAWVCVSEQFDIVKLMEKKFLIVLDDMWIDNSNSRQWKTLQKPFQYGKKGSKVLITTRNDTAADVVRTMKAYHLSLLSEKDSWSLFAKRVSLSPESKEYSTLEPVGRELVKKCNGLPLAVESLAALLRTNYDERDWDNVLKSELWEVFEEQNDEIIPALSMSYHYLPSNLKRCFVYCSLFPKDYLFDKDELVLLWMVEELLQPDGKKDLEEIGCQCFNQLIARSFFQSSSTYKSFYVIHDLMHDVATTHAGEFYFRAEKHEQDVRISNKTRHVLHNARGNFPFSQLVASCGEVKDGRTFLEINLGRKDPFNMENAPHIFLSQLKLLRVLSFNTFRLESLPDSIGNLIHLRYLDLSDTWIETLPEELCYLYNLQTLKLNNCQHLKKLPLNMQDLKNLRHLDIEGAGIEEMPKGMSKLKDLHFLSDYVVGKHADNGIKELGALTNIHESLRICQLENIMDGAQALEARIADKKHITGLHLKWSYNPCYIDDSQDILKNLRPHTNLRKLSINEYKGLAFPNWLGHSSYKNMTKLYLYGCSNCLELPSLGQLPSLKRLRLSNFYRLQRVGAKFYKEDGSSSGGAAFPVLEFLWNGLLRGVAFSFKCFSSA 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91229g00002 835 Pfam NB-ARC domain 244 392 IPR002182 GO:0043531
Stsc91229g00002 835 Gene3D - 244 301 IPR027417 -
Stsc91229g00002 835 Gene3D - 162 243 IPR027417 -
Stsc91229g00002 835 Gene3D - 15 120 - -
Stsc91229g00002 835 PRINTS Disease resistance protein signature 342 356 - -
Stsc91229g00002 835 PRINTS Disease resistance protein signature 199 214 - -
Stsc91229g00002 835 PRINTS Disease resistance protein signature 596 612 - -
Stsc91229g00002 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 406 IPR027417 -
Stsc91229g00002 835 SUPERFAMILY RNI-like 544 794 - -
Stsc91229g00002 835 FunFam Probable disease resistance protein At1g63360 392 477 - -
Stsc91229g00002 835 Gene3D - 391 478 IPR036388 -
Stsc91229g00002 835 SMART LRR_typ_2 622 645 IPR003591 -
Stsc91229g00002 835 SMART LRR_typ_2 575 598 IPR003591 -
Stsc91229g00002 835 PANTHER DISEASE RESISTANCE PROTEIN RP 42 815 IPR044974 GO:0006952
Stsc91229g00002 835 Gene3D Ribonuclease Inhibitor 530 817 IPR032675 -
Stsc91229g00002 835 Pfam Rx N-terminal domain 14 98 IPR041118 -
Stsc91229g00002 835 Gene3D - 305 390 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91229g00002 Stsc-Chr91229 6620 9214 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91229g00002 565 648 WRKY Transcription Factor Family AT4G12020 35.294 2.32e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91229g00002 - - aip:107625739 1330.47