Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91225g00001 ATGCAAAAACAGAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTCATTGCATCAAAGTATGAAGAGATTTGTGCTCCTAGAGTGGAGGAATTTTGCTTCATCACAGACAACACATACACAAAAGAAGAGGTATTGAAAATGGAGAGTGAAGTTCTAAACATTTTGCATTTTCATTTATCTGTTCCCACAACCAAAACATTTCTGAGGAGATTCATCCAAGCTGCACAATCTTCATACAAGGCTCCTTGCATCGAATTGGAATTCTTGGCAAATTATTTAGCAGAGCTTACACTTGTTGAGTACAGTTTCTTGCAGTATCTACCTTCCCTTATAGCTGCATCTGCTGTGTTCCTTGCAAGATGGACTTTAAACCAATCAGAACATCCATGGAATCCAACCTTGGAGCACTATACAAACTACAAAGCCTCAGAGCTTGAAACTGTTGTTCTTGAACTTGTAGATTTGCAGCTCAATACCAAAGGCAGTTCCCTCAATGCTATTCGTGAAAAGTATAAAGAAAAGAAGTTCAATAGTGTGGCAACACTGCCTCCAAATCCAAAACCAGTGCAATCGCTCTTCCAAAGTTCAAGTGTAAATTAA 600 0.3933 MQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMESEVLNILHFHLSVPTTKTFLRRFIQAAQSSYKAPCIELEFLANYLAELTLVEYSFLQYLPSLIAASAVFLARWTLNQSEHPWNPTLEHYTNYKASELETVVLELVDLQLNTKGSSLNAIREKYKEKKFNSVATLPPNPKPVQSLFQSSSVN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91225g00001 199 Pfam Cyclin, C-terminal domain 62 184 IPR004367 -
Stsc91225g00001 199 PANTHER CYCLINS 3 173 IPR039361 -
Stsc91225g00001 199 SMART cyclin_7 66 154 IPR013763 -
Stsc91225g00001 199 SMART cyclin_7 1 53 IPR013763 -
Stsc91225g00001 199 Gene3D - 1 54 - -
Stsc91225g00001 199 Pfam Cyclin, N-terminal domain 1 59 IPR006671 -
Stsc91225g00001 199 FunFam Cyclin A1 49 181 - -
Stsc91225g00001 199 SUPERFAMILY Cyclin-like 61 184 IPR036915 -
Stsc91225g00001 199 SUPERFAMILY Cyclin-like 2 59 IPR036915 -
Stsc91225g00001 199 PIRSF Cyclin_A_B_D_E 1 198 IPR046965 GO:0016538|GO:0044772
Stsc91225g00001 199 SMART Cyclin_C_2 62 185 IPR004367 -
Stsc91225g00001 199 Gene3D - 55 191 - -
Stsc91225g00001 199 CDD CYCLIN_AtCycA-like_rpt2 62 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91225g00001 Stsc-Chr91225 5132 8728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91225g00001 1 193 Core Cell Cycle Gene Families AT5G25380 70.466 2.05e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91225g00001 K06627 - gmx:100807750 325.865