Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91221g00002 ATGCAAACTCATCATCATCAGTCTTTCACATCCTACATATCCTCTTGTGGGAGAAACACCACTATTGGTCCCTTCTTGGACAATCCTGAAGATGCTGATCTTGTTCATGCTGATCATGACGAAGAAGCCTCCATTTCGCTCTCTCTTGGCCCTCCCGGTCAACACCACCACAACCCCAAGATCTCCACCACTTCACCACCGCACCATAATAACCATTACAATCCCAACGCTAACTGTGACGATGATGACCACAGTGGTGTAACCGTTGCTCTACACATTGGCCTTCCTTCCACAACAACAACAGCACCAACTGCACCAAACTCCACCAACACCACAAGTAAAACTGATCATCATACCATTCAACAGGCTCAGTACTGGATCCCTTCCCCTGCACAGATCCTCATTGGTCCCACTCAGTTCTCTTGCACCGTCTGCAACAAAATGTTCAACCGTTTCAATAACATGCAGATGCACATGTGGGGACATGGCTCACAATATCGGAAAGGACCAGAATCACTGAGAGGAGCAAAGCCAGCATCTTCAATGCTGAGACTACCATGCTATTGTTGCGCTGAAGGTTGCAAGAACAACATAGAGCATCCAAGATCAAGGCCTCTCAAGGACTTCAGGACACTCCAGACCCACTACAAGAGGAAGCACGGCGCCAAGCCCTTCGGCTGCCGGAAGTGCGGCAAGCCCTTCGCCGTCCGAGGAGACTGGCGGACTCACGAGAAGAATTGCGGCAAGCTTTGGTTTTGCATCTGTGGCTCCGATTTCAAGCACAAGAGGTCTCTCAAGGACCATGTCCGCGCCTTCGGAGACGGGCATGCTCCTCATACGGTTGAGAGCTGTGACCAGTTTGGGGATGAAGATGAAGATGATTACGAACTAGACGACGATGATGACAACGTAGAGTTAGAAGATAATAACTACAACAATCATAGTAATAACGGCAATCAAGGTGTTTTTAGTTTTAATTAA 981 0.4842 MQTHHHQSFTSYISSCGRNTTIGPFLDNPEDADLVHADHDEEASISLSLGPPGQHHHNPKISTTSPPHHNNHYNPNANCDDDDHSGVTVALHIGLPSTTTTAPTAPNSTNTTSKTDHHTIQQAQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQFGDEDEDDYELDDDDDNVELEDNNYNNHSNNGNQGVFSFN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91221g00002 326 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Stsc91221g00002 326 Gene3D Classic Zinc Finger 182 272 - -
Stsc91221g00002 326 PANTHER ZINC FINGER PROTEIN WIP2 36 300 IPR043584 GO:0003700|GO:0010468
Stsc91221g00002 326 MobiDBLite consensus disorder prediction 57 73 - -
Stsc91221g00002 326 SUPERFAMILY beta-beta-alpha zinc fingers 136 161 IPR036236 -
Stsc91221g00002 326 SUPERFAMILY beta-beta-alpha zinc fingers 208 245 IPR036236 -
Stsc91221g00002 326 FunFam Zinc finger protein WIP2 194 276 - -
Stsc91221g00002 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Stsc91221g00002 326 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91221g00002 Stsc-Chr91221 17049 18569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91221g00002 41 281 C2H2 Transcription Factor Family AT1G13290 71.020 5.31e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc91221g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91221g00002 - - adu:107490921 524.628