Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91217g00001 ATGGGAGTCCCAGAGAAGGACCCTCTCTCTCAATTGAGCTTACCTCCTGGTTTTCGGTTTTATCCAACAGATGAGGAGCTTCTTGTTCAGTACCTATGCCGCAAGGTTGCTGGCAACCATTTCTCACTTCCTATCATTGCCGAGATCGATTTGTATAAATTCGACCCTTGGATTCTCCCAGGCAAGGCGATTTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCCAGGGACAGGAAGTACCCAAACGGTTCGCGGCCGAATAGGGTTGCAGGCTCTGGATACTGGAAAGCTACCGGAACGGATAAAGTAATCAGTACCGAAGGCAGAAAAGTTGGAATCAAGAAAGCACTTGTTTTCTACATTGGCAAAGCACCCAAAGGGACCAAAACTAATTGGATCATGCACGAGTACCGTCTCCTCAACGGTTCTCAAAAGAGCCTCGGCAGCACCAAGCTAGATGATTGGGTTTTGTGTCGGATATACAAGAAGAACTTGAGCTCATCACAAAAGGCCAATATGCCATGCTTTTCGAGCAAAGAATGGAGCAATGGATCATCGCCTTCTTCATCGTCTCACATCGACGACATGCTCGAATTGCCGGATATCAATGACAGGAGCTTTGCCTTGCCGCGGGTTAACTCGCTGCAGCAGGAGGAGAAGCTAAACCTTTGCGGCACAGGCAATAATTTCCCGGACTGGGTCAACTCGGGGGGTCTCGACTCGGTCCCTGAGTTTGGAGGCCAATCCCAGGGGATAACAGGTTACAATGGAAATGACTTATATGTCACTTCCGGATCACAGTTCTGCGACGTCAACACTATGGTTGTGCCGGGTAACCCGACCGAGGAGGAGGTCCAGAGCGGCATTCGGACCCAACGGGTTGATGAGAATTTCACTTTATTTCAACCGAATTCGAATGTATTCACCCACCGGTATTTGACGAGTTCAGGTGACCCGTTGGGATTTGGATACCAAAACCAGCAATTCGGATTCGGGTTCAGAGAGTGA 1008 0.4891 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGNHFSLPIIAEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLNGSQKSLGSTKLDDWVLCRIYKKNLSSSQKANMPCFSSKEWSNGSSPSSSSHIDDMLELPDINDRSFALPRVNSLQQEEKLNLCGTGNNFPDWVNSGGLDSVPEFGGQSQGITGYNGNDLYVTSGSQFCDVNTMVVPGNPTEEEVQSGIRTQRVDENFTLFQPNSNVFTHRYLTSSGDPLGFGYQNQQFGFGFRE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91217g00001 335 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Stsc91217g00001 335 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Stsc91217g00001 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Stsc91217g00001 335 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Stsc91217g00001 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 203 - -
Stsc91217g00001 335 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91217g00001 Stsc-Chr91217 28132 29856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91217g00001 1 261 NAC Transcription Factor Family AT4G27410 63.345 1.85e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc91217g00001 NAM 5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91217g00001 - - adu:107478293 602.823