Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91206g00002 ATGGAAATGGAGGAATACCCTAATAACAATAATGAAAATGATAATAATAATAATAATTTGAACCAAGAAAACACAGGTGCGAGTCCAAGGCCAAGTTTCTTGTACTCATCAACTACTACTAATAGTGCTTCTCTTCATCACCAAGTTCCAATCAACACCTTTAATCTTCAATCTTCAGATCATCATCAACAATGTTTTGAATCTGATAATCAAGTTCTTGTTGTGAAGACTGAAGAAACAACCACCCCTAATCATTATCATCTTCAAACTCCAATTCTTCATCACTATCCTTTGTTGAGGGGGAACAATAATAATACTATGCATCATCCCCACCATAGCCAGCAACACCATCACCAACAAGGAGGGAATAATTACAACCAAAGCTCTAATAATGGTGAGGTTGAAGCCATCAAAGCCAAAATCATTGCTCATCCACAATACTCTAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCGCCGGAAGTGGTGGCGCGACTGGTGGCGGCGAGGCAAGAATCTGAGGCACGGCAACAACCATCTTCATCAGTTATTAGCTCAAGGGAAAGTTCCAATAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTGGTGAAGTATAGAGAGGAAATAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGGATAGAAACACAGTTAAATATGCTTTGCAATGGACCCGTTAGGATCTTCCAAGATGAGAAATGTGAAGGGATTGGTTCATCGGAAGAGGAACAAGAGAACAGTGGAGGAGAAACAGAATTACCAGAGATTGATCCAAGAGCTGAAGATCGTGAACTGAAGAACCATTTGCTTAGAAAATATAGCGGTTATTTGAGTAGCCTTAAGCAAGAACTCTCAAAGAAGAAGAAGAAAGGAAAACTCCCTAAGGAAGCTCGCCAGAAGCTACTTAATTGGTGGGAACTTCATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCAGAATCAACAGGTTTGGATCAAAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAGTTCATGGTGATGGATGGCCTTCATCATCATCATCAGAAAGCAACAACCCTCTATATGGATCCTCATTTCTTGCCTGATGCTCACTACCGTCTTGCCCCATGA 1212 0.4092 MEMEEYPNNNNENDNNNNNLNQENTGASPRPSFLYSSTTTNSASLHHQVPINTFNLQSSDHHQQCFESDNQVLVVKTEETTTPNHYHLQTPILHHYPLLRGNNNNTMHHPHHSQQHHHQQGGNNYNQSSNNGEVEAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLVAARQESEARQQPSSSVISSRESSNKDPELDQFMEAYYDMLVKYREEITRPIQEAMDFMRRIETQLNMLCNGPVRIFQDEKCEGIGSSEEEQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHHHHQKATTLYMDPHFLPDAHYRLAP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91206g00002 403 Pfam Homeobox KN domain 322 361 IPR008422 GO:0003677|GO:0006355
Stsc91206g00002 403 ProSiteProfiles 'Homeobox' domain profile. 302 365 IPR001356 GO:0003677
Stsc91206g00002 403 Pfam ELK domain 282 303 IPR005539 GO:0003677
Stsc91206g00002 403 SMART KNOX1_2 135 179 IPR005540 GO:0003677|GO:0005634
Stsc91206g00002 403 MobiDBLite consensus disorder prediction 255 277 - -
Stsc91206g00002 403 Gene3D - 299 372 - -
Stsc91206g00002 403 SMART KNOX2_2 190 241 IPR005541 GO:0003677|GO:0005634
Stsc91206g00002 403 MobiDBLite consensus disorder prediction 8 38 - -
Stsc91206g00002 403 SMART ELK_2 282 303 IPR005539 GO:0003677
Stsc91206g00002 403 ProSitePatterns 'Homeobox' domain signature. 340 363 IPR017970 GO:0000981|GO:0006355
Stsc91206g00002 403 MobiDBLite consensus disorder prediction 177 193 - -
Stsc91206g00002 403 MobiDBLite consensus disorder prediction 103 130 - -
Stsc91206g00002 403 MobiDBLite consensus disorder prediction 173 200 - -
Stsc91206g00002 403 SUPERFAMILY Homeodomain-like 303 378 IPR009057 -
Stsc91206g00002 403 ProSiteProfiles ELK domain profile. 282 302 IPR005539 GO:0003677
Stsc91206g00002 403 MobiDBLite consensus disorder prediction 1 38 - -
Stsc91206g00002 403 FunFam Homeobox protein knotted-1-like 2 307 369 - -
Stsc91206g00002 403 Pfam KNOX2 domain 195 240 IPR005541 GO:0003677|GO:0005634
Stsc91206g00002 403 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 372 - -
Stsc91206g00002 403 CDD homeodomain 314 366 IPR001356 GO:0003677
Stsc91206g00002 403 SMART HOX_1 304 369 IPR001356 GO:0003677
Stsc91206g00002 403 Pfam KNOX1 domain 136 178 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91206g00002 Stsc-Chr91206 11594 20964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91206g00002 132 403 Homeobox Transcription Factor Family AT4G08150 77.818 7.86e-146 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc91206g00002 KNOX2 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91206g00002 - - gmx:100800822 499.59