Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91206g00001 ATGAATTTTGATCATCATGGTATCTCCAATAACACAAGCCTTCAACTTGGTCTTGCTCTTGGAATTGGCCTCCATGAAGAGAAAAAGGAGGATGATTCATCAAAAAAAGGCAATAATCATAAGAATAAGGCTTACCCATCTCTTACATTAGGACCATTAATAAGTGATGATGATGAACAACAACAACAATTACAAGCTTCAAAGATTGTTGAAGACTCTTCTTGTTCTACTCCAAGCCCAGTGTCATCATTTTCCAACTCTTCTAATATCATAATCAAGAAGGAGAAAGATCATCAATTCTTAGTTGAAGAATTTGAGGTTGAGATTGATGAGAAGGTTCCATCATCATCAAGGGGATTACTTAGTGAAATAATTGATGAAGATGGTAACAACACAAAAAGGAAGAAACTTAGGCTCACAAAAGAACAATCTACAATCTTGGAAGAAAGCTTCAAGAAGCATTCTAATCCCAATCCGAAGCAAAAGCAAGAATTGGCAAGACAGTTGAACCTGCGGCCGAGACAAGTGGAGGTATGGTTCCAAAACAGGAGAGCCAGGACAAAGCTAAAACAAACAGAATCAGAGTGTGAGTTACTGAAGAAGTGCTGCGAAACTCTAACAGAAGAAAACAAGAGGCTCCAAAACGAGCTTCAACAACTCAAATCTTCAATGCAAACATCGCCACTCTTTTCCATCCAAATTCCACCACCAACTTCTCTTACTCTATGCCCTTCTTGTGACACAATTAATAATAATCATAATAATGGGGAATTATTGATTATAAATTCAAAACCTCATCATAATCATCATTTCCACAAAAATAATAATGGATATCCATTATTCAAACAATCATCATCCGCTACATGCTAG 870 0.3655 MNFDHHGISNNTSLQLGLALGIGLHEEKKEDDSSKKGNNHKNKAYPSLTLGPLISDDDEQQQQLQASKIVEDSSCSTPSPVSSFSNSSNIIIKKEKDHQFLVEEFEVEIDEKVPSSSRGLLSEIIDEDGNNTKRKKLRLTKEQSTILEESFKKHSNPNPKQKQELARQLNLRPRQVEVWFQNRRARTKLKQTESECELLKKCCETLTEENKRLQNELQQLKSSMQTSPLFSIQIPPPTSLTLCPSCDTINNNHNNGELLIINSKPHHNHHFHKNNNGYPLFKQSSSATC 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91206g00001 289 SMART HOX_1 132 194 IPR001356 GO:0003677
Stsc91206g00001 289 MobiDBLite consensus disorder prediction 270 289 - -
Stsc91206g00001 289 SMART halz 190 234 IPR003106 GO:0006355|GO:0043565
Stsc91206g00001 289 MobiDBLite consensus disorder prediction 54 85 - -
Stsc91206g00001 289 Pfam Homeobox associated leucine zipper 190 225 IPR003106 GO:0006355|GO:0043565
Stsc91206g00001 289 MobiDBLite consensus disorder prediction 27 85 - -
Stsc91206g00001 289 Coils Coil 182 223 - -
Stsc91206g00001 289 Pfam Homeodomain 133 188 IPR001356 GO:0003677
Stsc91206g00001 289 Gene3D - 127 197 - -
Stsc91206g00001 289 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Stsc91206g00001 289 CDD homeodomain 133 191 IPR001356 GO:0003677
Stsc91206g00001 289 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Stsc91206g00001 289 SUPERFAMILY Homeodomain-like 121 191 IPR009057 -
Stsc91206g00001 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91206g00001 Stsc-Chr91206 3000 5278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91206g00001 114 250 Homeobox Transcription Factor Family AT4G16780 62.774 2.50e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc91206g00001 Homeodomain 4.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91206g00001 K09338 - gmx:100797650 216.853