Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91203g00001 ATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGAAAGTGTTTGCCAGGATGCATCTTTGCACCTTACTTCCCACCAGAGGAGCCCCAGAAATTCGCCAATGTTCACAAGATCTTCGGAGCAAGCAATGTTACCAAACTTCTTAACGAGCTTCTGCCTCAGCAGAGGGAAGACGCTGTGAATTCCCTCGCGTACGAGGCAGAAGCTCGTGTGAGAGACCCTGTTTATGGTTGTGTTGGTGCCATCTCGTACCTTCAGAGACAAGTCCAGAGGCTTCAAAAGGAACTCGATGCCGCCAACGCGGATCTTCTTCGCTATGCTTGCAATGAAATCCCTCCACATCATCATATCCCTACTTTGGCACCACCATTAACTCCAACAATTCATCATCAACTTACACAAAGGCACTTTGGTGGTACAAGAATTGGAAATGATCATGGATTTGGATTTTATAGGCAATCTCCAACCACTTATTCCTTCCCTTATTCTCTTCCATGGAATGAGGACATCAATGGTGGAGGAGCTGAAGGAGGAGGTAATTTATGA 567 0.4586 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVQRLQKELDAANADLLRYACNEIPPHHHIPTLAPPLTPTIHHQLTQRHFGGTRIGNDHGFGFYRQSPTTYSFPYSLPWNEDINGGGAEGGGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91203g00001 188 Coils Coil 89 116 - -
Stsc91203g00001 188 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Stsc91203g00001 188 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Stsc91203g00001 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91203g00001 Stsc-Chr91203 8629 9476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91203g00001 1 113 AS2 family AT5G63090 93.860 4.77e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc91203g00001 LOB 3.7e-42 No_clan