Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91201g00002 ATGAAGAAGTATTACCTTAAGAGCAACCAACCTGGATCCTCCTCCACCATGAAGGTTTACCTGACTTACGGCGAGTGCCAAAAGAACCATGCTGAGTGGCTTGGGGGGTACGCGCTCGACGGTTGTCAAGCTTTCATGCCGAGCGGCGAAGAAGGAACGGCGGCTGCTCTTTCATGTGCTGCTTGTAACTGCCTTAGGAGCTTCCACAAGCTTGAA 216 0.5231 MKKYYLKSNQPGSSSTMKVYLTYGECQKNHAEWLGGYALDGCQAFMPSGEEGTAAALSCAACNCLRSFHKLE 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91201g00002 72 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
Stsc91201g00002 72 Pfam ZF-HD protein dimerisation region 22 70 IPR006456 -
Stsc91201g00002 72 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 71 IPR006456 -
Stsc91201g00002 72 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91201g00002 Stsc-Chr91201 26304 26519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91201g00002 21 72 Zinc finger-homeobox gene family AT3G28917 69.811 2.83e-22 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc91201g00002 ZF-HD_dimer 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91201g00002 - - ahf:112740679 119.783