Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91201g00001 ATGAGGAGGTACAATCTTAGGAGCAACGATTCATCAAGAAACCAAGAAAGCAACGATTCAAGAGACGTAAGAACATACGTGAGATATGGAGAGTGTGAGAAGAACCAAGCGGAGCGAATCGGAGGCCACGCCGTCGACGGTTGCAGAGAGTTCATGGCTAGCGGAGCTGAAGGAACACCTCAAGCTCTCACTTGCGCCGCTTGTGGCTGCAACAGAAGCTTCCACAAACTTGAAGTTCGAACTGAAGTTGTGGCCAGCCATGGCCGCCATGGCCAACAACGCTTACAAGAACAGCGTTAG 300 0.51 MRRYNLRSNDSSRNQESNDSRDVRTYVRYGECEKNQAERIGGHAVDGCREFMASGAEGTPQALTCAACGCNRSFHKLEVRTEVVASHGRHGQQRLQEQR 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91201g00001 99 MobiDBLite consensus disorder prediction 1 23 - -
Stsc91201g00001 99 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Stsc91201g00001 99 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Stsc91201g00001 99 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 89 - -
Stsc91201g00001 99 Pfam ZF-HD protein dimerisation region 27 78 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91201g00001 Stsc-Chr91201 13434 13962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91201g00001 23 84 Zinc finger-homeobox gene family AT3G28917 74.603 4.09e-26 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc91201g00001 ZF-HD_dimer 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91201g00001 - - ahf:112740680 184.111