Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91199g00004 ATGGCAAGGAAGAGAAAGACTTGTGAAGTAGTGGAAGATGGAAACATAATTGAGGGAAGTATGGGGTGGGAGGAGATGGTGAAGCAAGCCGCCGAGCTCGGGGGAGCTCGGAGGGCTAGAAAGCGCTATGTAGGCGTCCGGCAGAGGCCGTCCGGAAGATGGGTGGCTGAGATTAAGGACACCATCCAGAAGATAAGAGTGTGGCTAGGAACCTTCGATACGGCTGAAGAAGCGGCCAGAGCTTATGACGAGGCGGCTTGCCTTCTCCGAGGGGCTAACACAAGAACAAACTTCTGGCCTTGTTCTCAATCCTCGACAAGCCCTGCTCTTTCTTCAAAGATCACAAATTTGCTCCTCCAAAGGCTTAAGGAAAGGAACAACACTTGTTCTGCTTCTTCAGCTTCAATTTCTTCTTCTTCATCTTCTTCTCTTTCGGATTCTCTTCTCAACAATCAAGAGATGCAACAATTGGAGGCATGTGGAGGGACTAATTCAGCAGAATTCTCAATTGATCAGTTCAATGATCTCCTCAATGAGGAAGATTACGGCGCAAGTAACAGCGATTTTGTCAACAACACTGCAAGGATTGATTACATCACAAGCAGCTTTGAGTCTTGCTTGACTGAGAATGATTATGAGGACAAGAAGGGGGCCGAAACCGACACGGATTACAAGCCAGCCAGCGACGAGGACAGCGAGGGAGAAAGCTCGGATTTCGGCCTACAAAGCTATGCAGATTTCGGGTTTCTGGACAACATTTCGCCGCCGGCGAGCAGCTACTATTGGCCATTTGAGATGGCTCAAGAGATGGATGAAGGTGTGGAAGCAGAGAACTATGGCATACCTGAGTGCTTGAAGAGAATGAAGTATGAGAGGAAGATCTCAGCTTCACTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGGAACAAAAAGGGTAGGACAGGAATTTCCATAGCTGATCAATTGACAAGCCTTCAAATGGCTTGTAACAAAAACAAACAAGAGAAGAAGAATGATGAGGACAAAGAACACAAACAGGAAGAAGAAGAAGAAGAAAATCTTCATCATCCAATGCCAATTGACATGAGTTCATCATCATCAAGTGTTGTTGATGCAGAGCTCTTGTTTTGGAGCTCACTAGATCTTTCACCTATTTACACAAAATCTTTCCCTTATTTGAATTGTTAA 1209 0.4533 MARKRKTCEVVEDGNIIEGSMGWEEMVKQAAELGGARRARKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNTCSASSASISSSSSSSLSDSLLNNQEMQQLEACGGTNSAEFSIDQFNDLLNEEDYGASNSDFVNNTARIDYITSSFESCLTENDYEDKKGAETDTDYKPASDEDSEGESSDFGLQSYADFGFLDNISPPASSYYWPFEMAQEMDEGVEAENYGIPECLKRMKYERKISASLYAFNGIPECLKLKLESGNKKGRTGISIADQLTSLQMACNKNKQEKKNDEDKEHKQEEEEEENLHHPMPIDMSSSSSSVVDAELLFWSSLDLSPIYTKSFPYLNC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91199g00004 402 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Stsc91199g00004 402 Coils Coil 337 359 - -
Stsc91199g00004 402 MobiDBLite consensus disorder prediction 212 232 - -
Stsc91199g00004 402 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Stsc91199g00004 402 MobiDBLite consensus disorder prediction 339 372 - -
Stsc91199g00004 402 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Stsc91199g00004 402 MobiDBLite consensus disorder prediction 212 238 - -
Stsc91199g00004 402 MobiDBLite consensus disorder prediction 339 364 - -
Stsc91199g00004 402 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Stsc91199g00004 402 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Stsc91199g00004 402 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Stsc91199g00004 402 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Stsc91199g00004 402 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Stsc91199g00004 402 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Stsc91199g00004 402 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91199g00004 Stsc-Chr91199 22786 24028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91199g00004 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 3.18e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc91199g00004 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91199g00004 K09286 - gmx:100786711 428.713