Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91199g00001 ATGGGTTGCATCAATTCCAAGAGTGTTGTCTCTGGGGACTCACCTTATTTGTCACCTGTTGATCATGTGATTTTGGAGCCTCTTCCTGCACCTGCAGTTTCAGTTGCAGGATCAAGGGGGCATTCTCATGTATCATTGGCAGATGATAAGAAGAAATTGAAGAAGAACAGCTCCAAGAAGAGCAATGGGTCATTCAGCATCAGGCTTGGTTTTGCTAAGAGGCATGTTGATGCAGAACACAATGCTGCTGGTTGGCCTAGTTGGCTTACAACTACTGCTGCTGAAGCTGTTCATGGATGGCTCCCTCTTAGAGCTGATTCTTTTCAAAAGTTAGATAAGATTGGACAAGGTACTTATAGCAGCGTGTTCAGAGCACGTGAAGTCGAAACAGGAAGGATGTTTGCTCTGAAGAAGGTGAGGTTTGACAATTTACAACCTGAGAGCATCAGGTTCATGGCAAGAGAAATCTCGATCCTTCGCAGGCTAGACCATCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGCCAATCGAGTAGCATATACCTCGTTTTCGAGTACATGGAGCATGATCTTGCAGGCTTAGTATCTCGTCCTGATATCTTGTTCACTGACTCACAGATAAAATGTTACCTGAGACAGATATTGAGTGGAATTGAGCACTGTCATATCCGTGGTATCATGCATCGCGACATAAAAGTATCAAACATCTTATTGAACAATGAAGGTATTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTCCAAACAACAAGCATCAGCTAACGAGTCGGGTAGTAACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAACTATGGAGTGTCAGTGGATTTGTGGAGTGTTGGTTGTGTATTTGCCGAACTCTTTCTAGGAAAACCGATCCTTAAGGGAAGAACCGAGGTTGAACAACTACACAAAATTTTTAAACTGTGTGGATCTCCACCTGAGGATTACTGGAAAAAGTATAAGCTTCCTCATGCAACTGTCTTCAAACCACAAACTACTTACGAAAGCTCTATGCGTGAGAGGTGTGCAGAGTTTCCAGAAACTGCTGTTGATCTACTTGAGACTTTATTAGCCATTGACCCTGCCGACCGTGGAACTGCCTCCTCTGCCCTCATGTCTGATTACTTCAACACCAAACCTTATGCTTGCAATCCATCAAACTTGCCAAAGTATTCGCCTAGCAAAGAACTGGATGCTAAAAATCGGGATGATATGTCAAGGAAAAGGACCGATGATAAAATGCAAATGCGCGATGCTGCAACATCAAGAAGGCAGCCAAGACGAGTCAAGAAATATTTGCGAGAACCAATTGATCATAATCAAGCAGCTTTGAAAGAGAATGGTTCTCATAATGTTCGTAGAAGTGACGGTAGATCACATGCATCAAAGGGAACAGCACGAAAAGACCATCTAAACCCTGATATGGATGCAGTCTCAGACCTTTCGCAGATGGTGCATGTCGCGGATGGTAGTGGCTTCTCTGTACCAGCACAAGTTGGCTATGACTGGGTTAAAAGAAGAAAGCAAGATGCTTCATCCACACTTTCAGATGGCTCAAGAAGCAAAATTAGTGCATTGGATACAACCTTTGCTAAAGGCACTTATGATTTAAACAGACAAATGTTCACTGCTTTGGAAAGAAAATATAATGACAAACAAGGTTACCATGATGAAACTCGCGTAACCATGGATTTCGATCCTGCCGAACTATTGGATCATCAGGGCCATATGGATCATGGTTCGCAAGTGAGTGAACTGAGGCGCGAAGTTCGAATGTCAAGGTTTGGAAGAGAGAAATGA 1848 0.4307 MGCINSKSVVSGDSPYLSPVDHVILEPLPAPAVSVAGSRGHSHVSLADDKKKLKKNSSKKSNGSFSIRLGFAKRHVDAEHNAAGWPSWLTTTAAEAVHGWLPLRADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNLQPESIRFMAREISILRRLDHPNIMKLEGIITSRQSSSIYLVFEYMEHDLAGLVSRPDILFTDSQIKCYLRQILSGIEHCHIRGIMHRDIKVSNILLNNEGILKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEDYWKKYKLPHATVFKPQTTYESSMRERCAEFPETAVDLLETLLAIDPADRGTASSALMSDYFNTKPYACNPSNLPKYSPSKELDAKNRDDMSRKRTDDKMQMRDAATSRRQPRRVKKYLREPIDHNQAALKENGSHNVRRSDGRSHASKGTARKDHLNPDMDAVSDLSQMVHVADGSGFSVPAQVGYDWVKRRKQDASSTLSDGSRSKISALDTTFAKGTYDLNRQMFTALERKYNDKQGYHDETRVTMDFDPAELLDHQGHMDHGSQVSELRREVRMSRFGREK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91199g00001 615 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91199g00001 615 SUPERFAMILY Protein kinase-like (PK-like) 102 397 IPR011009 -
Stsc91199g00001 615 MobiDBLite consensus disorder prediction 465 490 - -
Stsc91199g00001 615 PANTHER CELL DIVISION PROTEIN KINASE 106 396 - -
Stsc91199g00001 615 Gene3D Phosphorylase Kinase; domain 1 95 190 - -
Stsc91199g00001 615 Gene3D Transferase(Phosphotransferase) domain 1 191 432 - -
Stsc91199g00001 615 MobiDBLite consensus disorder prediction 587 615 - -
Stsc91199g00001 615 FunFam probable serine/threonine-protein kinase At1g54610 191 432 - -
Stsc91199g00001 615 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Stsc91199g00001 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Stsc91199g00001 615 MobiDBLite consensus disorder prediction 411 457 - -
Stsc91199g00001 615 MobiDBLite consensus disorder prediction 401 490 - -
Stsc91199g00001 615 CDD STKc_CDK9_like 108 392 - -
Stsc91199g00001 615 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91199g00001 615 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91199g00001 615 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91199g00001 Stsc-Chr91199 4790 8065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91199g00001 100 442 Core Cell Cycle Gene Families AT5G10270 45.730 1.07e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc91199g00001 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91199g00001 - - gmx:100790917 819.305