LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91196g00003	ATGAAGACTAATCAGCATCACCACTGTAAGGATCCTACAATGGCAATCATCAAAGATGTACCTCCTCCTCCTTCTTCTTCTTCCGTCCAGATCCGAAAATGGACCAACCATGTGTTCCTCAGTTTCAGGGGTGAGGACACCCGAAAAGGCTTCACAGACCATATTTTTTTTGCACTTGAAAGAAGGGGTATCAAAACATTCAAGGACGATTATGATCTTCCCAGGGGAGAACTCATATCTGAAGGACTCATCAATGCAATTAAGAAGTCCATGTTTGCACTCATCGTCCTCTCACCAAACTATGCTTCTTCAAGTTGGTGCCTGGATGAGCTTCAAACTATTGTTGAATGCAGGAGCAAATTCGGTCAACAGTTTCTCCCTGTCTTCTATGGTGTAGAGCCTTCTGATGTAAGGCATCAACGAGGAACCTTCAAAGAAGCTTTCGCAAAACATGAACAGAGCTTCAAAGAAGATGGGGAGAAAGTGAAGAGATGGAGAGATGCTTTGGAAGAAGTTGCAGGTTATTCTGGTTGGAACTCCAAAGATAAATACGAGGCGGCATTGATTGAAACAGTTGTTGACCACATACACAAAATATTGATTCCTAAGTTGCCATCATGGGCAGATAACCTCATTGGCTTAGAAAAAAGAATAACAGAACTGAGTTCACTCATTGGCATGAAGTTGGATGATATTCGCTTTATAGGCATATGGGGCATGGGAGGCATTGGAAAAACAACAATTGCTAGATTAGTATATGAGTCAATCAAGGAGGACTTCATTGTTAGTTGCTTTCTTGCAAACATTAGAGAGATGTGTGCAACAAATGGCATAGTTCACATCCAGAGGGAACTTCTTTCTCATCTTAATGTAAGACACAATTACTTCCATAATTCGTTTGATGGGAAAAAAATAATAGCAAACTCTCTCTGCAACAAGAAGGTCCTCCTCGTCCTTGATGATATAAGTCATTTAAGCCAATTAAATCACTTGGCTGGGAAGCAAGAATGGTTTGGTCCTGGTAGCAGAATACTGATCACAACCAGGGATAAGCATCTACTTGTGACACATGGAGTGCATCAAACTTGTGAGCTTGAAGGTTTAGTCTCAAATGAAGCTCTCCATCTCTTCTGTTTGAAGGCTTTTAAACGAGATTGGCCTAGAAGGGGGTACTTGGATTTGTGCAAAGAAGTAGTTGAATATACAAAAGGCCTTCCATTGGCACTTGAAGTATTGGGTTCCTATCTTTATGGAAGAGCTGCTGAGGTTTGGCATAGTGCTTTAAAACAAATAAGAAGCTCTTCACACCCTGAAATCCAAAATTCATTGAAAATAAGTTATGATGATCTGCATAACACAGAAAAAGAAATGTTTCTGAACATCGCCTGTTTCTTCAAAGGCATGGATAAAGATGAAGTGATAGAAATCTTAGAAAATTGCGGTTATTTTCCCAAAATTGGAATTGAAATTTTGGTTGAAAAATCCCTGATAACTCTTGGTGGGACAAATATATTGGAAATGCATGATTTGCTTCAAGAAATGGGAAGGAATATAGTATTTCAAGAATCTCCAATTGATCCGGGCAAACGTAGTAGATTGTGGTCTCCAAATGATATCAGCAGTGTATTGACAAAAAATAAGGGAACTGAAGCAATTCAAGCAATAGTTCTGAACTCTGTTGAACCATATGAAGCAAGATGGAGTGTTGAAGCTTTCTCCAACACCAGCCAGCTGTGGTTACTCAAGTTATGTGAGGTGCAACTTCCCATGGGCCTCAACTGCCTTCCTTGTGCCCTAAAAGTTCTTGAATGGAGAGGATGTCCTTTGAAAACTTTGCCACTTCTTGATCATATGGATATTGTTGACATCAAATTGTCTCATAGCAAAATTGAACTACTTTGGCACGGAACAAAGATTCTAGAGAGGTTGAAGTCCATCAACTTGAGTTTTTCCAAGAACTTAAACCAAACCCCTGACTTTTCTGAAGTTCCCAATCTTGAATCATTGGTTCTTGAAGGTTGTACAAGCCTGACCATAATCCACTCGTCCCTTGTGCACCTCAAAAAAATTGTTCAATTGAATTTGAAAGACTGTAAAAAGCTCAAAGCTCTTACAGGTAAAATGGAGATGAGTTCACTAAAGTACTTAGATTTTTCCGGTTGCTCAGAATTGAAAACTGTCCCAGAGTTTGGGGGTTGCATGAAACATCTATCGATGCTTTCTTTCGAGGGAACTGCTATAACAAAGCTACCCTCATCACTAGGATGTCTAGTTGGACTTGCTGTATTGAAGTTAAAGAATTGCAAGAATCTTGTTTGCCTTCCAGATAGCATTTGCAAACTGACGTCCCTCAAAATTTTGAATGTTTCTGGTTGCAAAGGGATGATACCTAAGTTAAGTTCCTTTCTCCCTTTTAAGTGTGTGTCTGGTTGTGTTCAAGCTCCCACTAGTTTTGGAGTACCCTTTTCCATCTCCTGTCCATGTTTCTTGACAAGCTTAAACTTAAGTTATTGCAATCTATCTGCGGAATCAATACTAGATGGTTTTTGTAGCTTGTCTTTTCTGAGGAGTTTAAACCTTTCTGGCAATAAATTTGTTACCTTATCAAATAACATTTCCAAGCAGTCCAAGCTTGAATACCTTGGTCTAAATGGGTGCAAAAAGCTCAAGTTGTTGCCAGAGCTTCCCTTAAACTTAAAAAGATTAGATGCAAGCAATTGTACATCACTGGTAACTTCCACGTTTCAACCATCCAGGCTGCCATCTCGGCGATTGAAGACTTATGAACCACCATCTATACAGTTGCACATACCAACAGAACTGAAGAACCTTTTTAAGGGGCTTCGCTTTGCCGCCACAACATTTGAAATGGTTATACCAGGAAGTGATATTCCATCGTGGTTTGCACCTCAAAAATTCTCTTCATATGCAGAAAAGCCATTCTTCACTGCTTTTCCTCCAACTGAAGGGGTGGGATATGCTGTCTGTTTCCTGCTAGAAAGTGCAAAACCATCGCAGATGTGCCGTCATAAAATCACGTGTTCCATTGGAAGGCGCACACAATCAAAAGTTGATTTTTCTTTCCTTCATGGTGACTTAGATTTACCTCGTAGAGGACGATCTCTGAAAGGCAAACAATCAAAAGTTGATCCTCTTGGTCACCAAAAGGAAAAGAAAGTTGATCCTGCCATTATTATCACCAGCAGAAATTTACCTCTTATGCTGCCAAACAGCCGTCACCTTTATATTCTCTGTGTCCATTAA	3264	0.3989	MKTNQHHHCKDPTMAIIKDVPPPPSSSSVQIRKWTNHVFLSFRGEDTRKGFTDHIFFALERRGIKTFKDDYDLPRGELISEGLINAIKKSMFALIVLSPNYASSSWCLDELQTIVECRSKFGQQFLPVFYGVEPSDVRHQRGTFKEAFAKHEQSFKEDGEKVKRWRDALEEVAGYSGWNSKDKYEAALIETVVDHIHKILIPKLPSWADNLIGLEKRITELSSLIGMKLDDIRFIGIWGMGGIGKTTIARLVYESIKEDFIVSCFLANIREMCATNGIVHIQRELLSHLNVRHNYFHNSFDGKKIIANSLCNKKVLLVLDDISHLSQLNHLAGKQEWFGPGSRILITTRDKHLLVTHGVHQTCELEGLVSNEALHLFCLKAFKRDWPRRGYLDLCKEVVEYTKGLPLALEVLGSYLYGRAAEVWHSALKQIRSSSHPEIQNSLKISYDDLHNTEKEMFLNIACFFKGMDKDEVIEILENCGYFPKIGIEILVEKSLITLGGTNILEMHDLLQEMGRNIVFQESPIDPGKRSRLWSPNDISSVLTKNKGTEAIQAIVLNSVEPYEARWSVEAFSNTSQLWLLKLCEVQLPMGLNCLPCALKVLEWRGCPLKTLPLLDHMDIVDIKLSHSKIELLWHGTKILERLKSINLSFSKNLNQTPDFSEVPNLESLVLEGCTSLTIIHSSLVHLKKIVQLNLKDCKKLKALTGKMEMSSLKYLDFSGCSELKTVPEFGGCMKHLSMLSFEGTAITKLPSSLGCLVGLAVLKLKNCKNLVCLPDSICKLTSLKILNVSGCKGMIPKLSSFLPFKCVSGCVQAPTSFGVPFSISCPCFLTSLNLSYCNLSAESILDGFCSLSFLRSLNLSGNKFVTLSNNISKQSKLEYLGLNGCKKLKLLPELPLNLKRLDASNCTSLVTSTFQPSRLPSRRLKTYEPPSIQLHIPTELKNLFKGLRFAATTFEMVIPGSDIPSWFAPQKFSSYAEKPFFTAFPPTEGVGYAVCFLLESAKPSQMCRHKITCSIGRRTQSKVDFSFLHGDLDLPRRGRSLKGKQSKVDPLGHQKEKKVDPAIIITSRNLPLMLPNSRHLYILCVH	1087

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91196g00003	1087	Pfam	NB-ARC domain	229	449	IPR002182	GO:0043531
	Stsc91196g00003	1087	Gene3D	Ribonuclease Inhibitor	566	729	IPR032675	-
	Stsc91196g00003	1087	Gene3D	Ribonuclease Inhibitor	730	944	IPR032675	-
	Stsc91196g00003	1087	PRINTS	Disease resistance protein signature	234	249	-	-
	Stsc91196g00003	1087	PRINTS	Disease resistance protein signature	309	323	-	-
	Stsc91196g00003	1087	PRINTS	Disease resistance protein signature	402	416	-	-
	Stsc91196g00003	1087	PRINTS	Disease resistance protein signature	708	724	-	-
	Stsc91196g00003	1087	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	37	730	IPR044974	GO:0006952
	Stsc91196g00003	1087	SUPERFAMILY	L domain-like	507	911	-	-
	Stsc91196g00003	1087	SMART	till_3	35	175	IPR000157	GO:0007165
	Stsc91196g00003	1087	ProSiteProfiles	TIR domain profile.	34	200	IPR000157	GO:0007165
	Stsc91196g00003	1087	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	198	460	IPR027417	-
	Stsc91196g00003	1087	Gene3D	-	30	199	IPR035897	-
	Stsc91196g00003	1087	Gene3D	-	200	362	IPR027417	-
	Stsc91196g00003	1087	FunFam	Disease resistance protein (TIR-NBS-LRR class)	32	202	-	-
	Stsc91196g00003	1087	Gene3D	-	367	456	IPR042197	-
	Stsc91196g00003	1087	MobiDBLite	consensus disorder prediction	1	28	-	-
	Stsc91196g00003	1087	Pfam	TIR domain	37	198	IPR000157	GO:0007165
	Stsc91196g00003	1087	SUPERFAMILY	Toll/Interleukin receptor TIR domain	25	178	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91196g00003	Stsc-Chr91196	13240	17465	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91196g00003	16	792	WRKY Transcription Factor Family	AT4G12020	32.456	1.84e-99	345

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91196g00003	-		-	ahf:112733264	1327.38