Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91178g00005 ATGTCAAGTAATGGATATGTGGAGTGTGAAAAGAAGCCATTCTTCTTACTGAATCATCAAGATCCCCTGTTCAATTGCGAACAAGTCAATAGTACTCACTCAATGGCACATGCTCCTTTTCCTTACAGTGAACCTTTTTTCGGTAGTTCATTAGTTGCTTATGGACCGCAGGCTGTTAGTCAAACTCCGATGTTGCCCCAAGTGATGGGATTAGGATCCCCCAGAATTGCACTACCACTTGATCTTGCTGAAGATGGCCCCATTTATGTCAATGCTAAACAATACCATGGTATACTGAGGCGGAGACAGTCGCGAGCAAAGCTTGAGCCCTATCTTCATGAGTCCCGACATCGCCATGCTTTGAAAAGGATTAGGGGATCTGGGGGACGCTTTCTCAGCTCTAAACAGCTGCAACTGTCTAATTCAGAACTTGTTAATGGTGCTTGTTCAGGCTTGAACCCTGGCAATGTATATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCTCTCTAGAATAGGAGAAAACGCATCTTCCATCACAACGTGCTCTGACCTAACAAGTTTCTCTAGCAACGACATCAATTTCAGGCATCCTGAGCACAATTTCTTAGGAAGTTCCCCAAACATGGGGGGAGCATCACATTGCAGTGGGGGACACACCTTTGGTTGTTGA 675 0.4489 MSSNGYVECEKKPFFLLNHQDPLFNCEQVNSTHSMAHAPFPYSEPFFGSSLVAYGPQAVSQTPMLPQVMGLGSPRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEPYLHESRHRHALKRIRGSGGRFLSSKQLQLSNSELVNGACSGLNPGNVYQKKDASEVESHLSRIGENASSITTCSDLTSFSSNDINFRHPEHNFLGSSPNMGGASHCSGGHTFGC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91178g00005 224 ProSitePatterns NF-YA/HAP2 subunit signature. 89 109 IPR018362 GO:0003677|GO:0016602
Stsc91178g00005 224 Gene3D - 84 136 - -
Stsc91178g00005 224 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 198 IPR001289 GO:0003700|GO:0006355
Stsc91178g00005 224 SMART cbf3 83 134 IPR001289 GO:0003700|GO:0006355
Stsc91178g00005 224 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 87 131 IPR001289 GO:0003700|GO:0006355
Stsc91178g00005 224 ProSiteProfiles NF-YA/HAP2 family profile. 84 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91178g00005 Stsc-Chr91178 11439 13911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91178g00005 5 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.898 4.49e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc91178g00005 CBFB_NFYA 6.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91178g00005 K08064 - gmx:100792905 290.426