Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91173g00002 ATGGTTGATGGTTATAGAATTATGGTGGAGAATAGCAGCAATGGAAATGCAACAACAAATCACATGATGTTGGGATTTCTTGCTGGAATTTCAACAGTTATGTTAATTGCTGCCTTATTGTTCTGCCTCTTTGGGACAAAGATCATTGCACATTTCAGACAACACAGGAATCTGAAATTGAAAGGAAAAGAGTACAAAAGCTTCAAAGATGAATCAATGCCACTAAGGCGTTTTAGCTTTGAGGAAATAGAGAGAGCTACCAAGAACTTTAGCCAAGATTTCTTAATTGGTTCTGGTGCATTTGGAAATGTTTACAAAGGAAACTTTGAATTAGAAGGAACTTTAGCCATTAAGAGAGCTCATGGCGAATCCTTCTTAAGCGTCGAAGAATTCCAAAACGAAGTTAAGCTCCTTGCAGCTGTGAAGCACAGAAATCTTATTGGTCTGGTGGGGTATTGTGAAGAACCAGAAAGATTTGGAGCAAGAATTCTGGTATATGAATATGTACCAAATGGCTCTCTCCTTGAATATATGATTGGAAACAGGAATAGCTTGACTTGGAAGCAAAGAGTGAAAATAGCAATAGGAGCAGCTAGAGGCATAGCTTATTTACACGAAGGAGTAAAGCCGAGTATAATTCATCGTGATCTCAAACCAAGCAACATCTTGTTAGGTGAAGGTTTTGAGGCTAAGGTGTCGGATTTCGGGTTGGTGAAATCCGGCCCTACTGGGGACCAATCGCATGTGAGTAGCCAAGTTAAAGGGACACCGGGGTATCTTGATCCGGCGTATTGTTCAAGCTTTCACTTGACAAAATTCACTGATATTTATAGCTTTGGAGTCATACTTCTTCAACTTATTTCAGCAAGACCTGCTGTTGATGCAAATGAGGTACCAAGCAAGCAACATATCATTGATTGGGCAAGCCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATCATAGATGCAAACCTTCTATGTCAAAGTGAGCCATGCAATATGAGAGTTATGCTGAAGATGGGTCAACTTGCTTTAAGATGTGTGGTTCAAGAACCAAAAAGTAGACCTACAATGATTCAAGTGTGTCAAGAACTAGAAGAAGCACTATACTCTGAAGATACCTTCAACAACAAGCAACCTTGTTCAAAGGGTTTCCTTAGATCAATTGGATTGTCTCAGTCTCAGCAACCATCAGTGGAAAACAATGATTGCTCACAGAGCTTTGTGAGCATAGATGGTGTAGGGCTTCAGAAATTCCATATTGATATGGATAGCTTATCATTTCAGAGCACAAGGTTAATGTGCCTAGAAAATAATAGTATAAGTATTGACATTGATAAGAACAACTTGAAGAGAATTCAAGAGGATGGTGACATATGA 1380 0.392 MVDGYRIMVENSSNGNATTNHMMLGFLAGISTVMLIAALLFCLFGTKIIAHFRQHRNLKLKGKEYKSFKDESMPLRRFSFEEIERATKNFSQDFLIGSGAFGNVYKGNFELEGTLAIKRAHGESFLSVEEFQNEVKLLAAVKHRNLIGLVGYCEEPERFGARILVYEYVPNGSLLEYMIGNRNSLTWKQRVKIAIGAARGIAYLHEGVKPSIIHRDLKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQVKGTPGYLDPAYCSSFHLTKFTDIYSFGVILLQLISARPAVDANEVPSKQHIIDWASPSLEKGNVEEIIDANLLCQSEPCNMRVMLKMGQLALRCVVQEPKSRPTMIQVCQELEEALYSEDTFNNKQPCSKGFLRSIGLSQSQQPSVENNDCSQSFVSIDGVGLQKFHIDMDSLSFQSTRLMCLENNSISIDIDKNNLKRIQEDGDI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91173g00002 459 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91173g00002 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Stsc91173g00002 459 SUPERFAMILY Protein kinase-like (PK-like) 68 366 IPR011009 -
Stsc91173g00002 459 Gene3D Transferase(Phosphotransferase) domain 1 169 384 - -
Stsc91173g00002 459 SMART serkin_6 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91173g00002 459 PANTHER OS01G0750732 PROTEIN 32 389 - -
Stsc91173g00002 459 Pfam Protein tyrosine and serine/threonine kinase 95 365 IPR001245 GO:0004672|GO:0006468
Stsc91173g00002 459 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 169 371 - -
Stsc91173g00002 459 Gene3D Phosphorylase Kinase; domain 1 50 168 - -
Stsc91173g00002 459 FunFam Putative LRR receptor-like serine/threonine-protein kinase 56 168 - -
Stsc91173g00002 459 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Stsc91173g00002 459 CDD STKc_IRAK 96 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91173g00002 Stsc-Chr91173 6821 9832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91173g00002 76 417 Receptor kinase-like Gene Family AT1G30570 41.092 9.54e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc91173g00002 PK_Tyr_Ser-Thr 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91173g00002 - - var:108328541 634.409