Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91170g00001 ATGGAAAGGGCTCTTGTAGCGTGGATGGTTTTGGTGATTTCCACCACTGTTTTCTTCCACTCCTCCCTCTCCCTCACACAAGATGGTGTGACATTGTTGGAAATCAAAAGTAGTTTGAATGACACAAGGAATTTTCTCAGTGACTGGCAACATTCTAATATCAATTCCCATTGTAGATGGACTGGTATCACCTGTTATCCTGGGGAAGAACACCGAGTTCGCTCAATTAATCTGCCTTGCATGCAACTTGGCGGAATCATATCTCCCAGCATAGGCAAACTCAGTCGACTGCGGAGATTGGCACTTCATCAGAACAGTTTACATGGAATTATCCCCAACGAAATTACCAATTGTACTCAGCTAAGAGCATTGTACTTGAGAGCTAATTATCTTCAAGGAGGAATCCCCTCAGACATTGGAAACCTATTGCATTTAAAGATATTGGATTTATCAAGCAACTCACTAAAGGGTGCAATACCTCCTTCTATTGGACAACTTATAAATTTGCAACATCTGAACTTGTCGACAAATTTCTTTTCTGGCCAAATCCCTGACGCTGGAGTACTAGGAACCTTTGGAAAAAATGTGTTTATTGGCAATTTAGATCTTTGTGGATGGCAAGTTAAAAAACCATGTCGGACATCACTCGGTTTCCCTGTGGTGCTACCACATGATGAGAATGATGAATCCGAAGTACCCACCAAAAGAACATCACATTATGTGAAGTGGTTGTTAATTGGTGCAATATCAACAATGGGCATTGCACTTGTCTTGGTACTACTGTTATTCTGGATTTGTTTGCCATCAAAGAAGGAAAGAGCTGCTAGGCAATACAAAGAAGTGAACAAACAAGCTAATCCAGAATCAAGTTCAAAGGGTGGTACAATACTAATTACTTTCCATGGTGATCTGCCATACCCATCATCTGAGATCATAGAGAAACTGGAGTCACTTGATGAAGAGGATGTGGTAGGGTCTGGAGGATTCGGTACTGTTTTCCGCATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGCTTGGTAGAGGACGGGATGGGTCAGATCAAGGGTTTGAAAGGGAACTAGAAATCTTGGGTAGTATCAAGCACATCAATTTAGTAAACCTGCGTGGTTATTGCAGGCTTCCTTCTACAAAGCTCCTTATCTACGATTATTTGGCCTTCGGAAGCTTAGATTGTCTCTTGCATGGAAACACTGAGCAATCTATGAACTGGAGCACTCGCCTAAAGATAGCCCTGGGTTCTGCCCGGGGTTTGGCTTACTTGCATCATGACTGCTCCCCAAAAATCGTGCATCGAGACATTAAATCTAGCAACATCCTTCTGGATGAAAACATGGAGCCTCATGTCTCTGATTTTGGACTTGCAAAGCTTTTGGTTGATGATGACTCTCATGTCACTACAGTTGTTGCGGGAACATTCGGCTATTTGGCGCCAGAATATCTACAAAGTGGGAGAGCAACTGAGAAGTCAGATGTATATAGCTTTGGAGTTCTGTTGCTAGAACTGGTAACTGGGAAGAGACCAACAGATCCTTCCTTTCTGAAGAGAGGACTAAACGTTGTTGGTTGGATGAAGACGGTCCTAAAAGAAAACCGATTCAAAGAAGTGGTAGACAAAAGATGCACCGATGCAGATTTGGCATCTGTTGAAGTGATCATCGAACTGGCAGCAAGTTGCACGGATGCAAATGCGGACAACCGTCCGTCGATGAATGAAGTGGTAAAATTGCTGGAGCAGGAGCTCGATGATCTCTCCTTTGTGCACATATGTCGCCGCTCCTGGTCGAACTTCGTCGCCGTCGCTTCTACTTGGTCCTCTCTCGCGCCGCTTCCAAGCAAGAGCATGTCGTCGCCGTCCTTTGTTGACGCGGTACGTGCCATCGCTGCTGCAGCTTCTTTCCTCGGAAGGGATCTTTGGAAGCCCCCGCCACTGCAAGGTGCCCATGGTTCCCGCCGTCCAATAGTCGCCGATGGCTCAGGTGAACAACAAAAAATTCTTGGTCCAAAGATAGCAGCCGAATCAACATCCACCAACAACGGTCAGAAGTTATCAGGGAAGGTGGCCATAGTCACCGGAGGTGGGAGTGGCATCGGGGAGGCCACGGCGCGTGTGTTCGCAGGGCAAGGGGCGCGTATGGTGGTCATCGCAGACATTCAAGATGAGCTTGGCAATCAGGTGTCTGCTTCCATTGGAAGCCAAAGATGCACCTTCGTCCACTGTGATGTAACGGACGAAGATGAAGTCCAGAGCCTTGTCCAATTTACGGTTAACAATTATGGTCAACTAGACATCATGTTTAGCAATGCCGGCTTTTGTAGTTCCTCCTTGCAGACAGTTATTGACCTTGACATGTCCGAATTTGATCGGACGCTCTCCATAAATGTCCGCGGCATGGCATTGTGCGTGAAACATGCAGCACGGGGGATGGTAGAGAAGCAGGTGAGGGGGACCATAGTATGCACGGCCAGCGTCGCAGCCAGCTGCCAGCCACGGTGGCTCGCAGAAGACAGACTACACCATATCAAAGCACGGAGTCATAGGGCTAATGAGATCAGCAAGCGTGCAACTTGCAGCGCATGGAATTAG 2613 0.4657 MERALVAWMVLVISTTVFFHSSLSLTQDGVTLLEIKSSLNDTRNFLSDWQHSNINSHCRWTGITCYPGEEHRVRSINLPCMQLGGIISPSIGKLSRLRRLALHQNSLHGIIPNEITNCTQLRALYLRANYLQGGIPSDIGNLLHLKILDLSSNSLKGAIPPSIGQLINLQHLNLSTNFFSGQIPDAGVLGTFGKNVFIGNLDLCGWQVKKPCRTSLGFPVVLPHDENDESEVPTKRTSHYVKWLLIGAISTMGIALVLVLLLFWICLPSKKERAARQYKEVNKQANPESSSKGGTILITFHGDLPYPSSEIIEKLESLDEEDVVGSGGFGTVFRMVMNDCGTFAVKRLGRGRDGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAFGSLDCLLHGNTEQSMNWSTRLKIALGSARGLAYLHHDCSPKIVHRDIKSSNILLDENMEPHVSDFGLAKLLVDDDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFLKRGLNVVGWMKTVLKENRFKEVVDKRCTDADLASVEVIIELAASCTDANADNRPSMNEVVKLLEQELDDLSFVHICRRSWSNFVAVASTWSSLAPLPSKSMSSPSFVDAVRAIAAAASFLGRDLWKPPPLQGAHGSRRPIVADGSGEQQKILGPKIAAESTSTNNGQKLSGKVAIVTGGGSGIGEATARVFAGQGARMVVIADIQDELGNQVSASIGSQRCTFVHCDVTDEDEVQSLVQFTVNNYGQLDIMFSNAGFCSSSLQTVIDLDMSEFDRTLSINVRGMALCVKHAARGMVEKQVRGTIVCTASVAASCQPRWLAEDRLHHIKARSHRANEISKRATCSAWN 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91170g00001 870 Gene3D Ribonuclease Inhibitor 26 214 IPR032675 -
Stsc91170g00001 870 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 189 - -
Stsc91170g00001 870 SMART serkin_6 318 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91170g00001 870 Gene3D Phosphorylase Kinase; domain 1 280 393 - -
Stsc91170g00001 870 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 394 596 - -
Stsc91170g00001 870 PRINTS Glucose/ribitol dehydrogenase family signature 696 713 IPR002347 -
Stsc91170g00001 870 PRINTS Glucose/ribitol dehydrogenase family signature 819 835 IPR002347 -
Stsc91170g00001 870 PRINTS Glucose/ribitol dehydrogenase family signature 769 780 IPR002347 -
Stsc91170g00001 870 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Stsc91170g00001 870 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Stsc91170g00001 870 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515
Stsc91170g00001 870 Pfam Leucine rich repeat 72 131 IPR001611 GO:0005515
Stsc91170g00001 870 Gene3D Transferase(Phosphotransferase) domain 1 395 597 - -
Stsc91170g00001 870 SUPERFAMILY L domain-like 26 206 - -
Stsc91170g00001 870 Pfam short chain dehydrogenase 695 836 IPR002347 -
Stsc91170g00001 870 PANTHER LEUCINE RICH REPEAT KINASE 2 76 588 - -
Stsc91170g00001 870 ProSiteProfiles Protein kinase domain profile. 318 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91170g00001 870 Pfam Protein kinase domain 320 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc91170g00001 870 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 690 837 IPR036291 -
Stsc91170g00001 870 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Stsc91170g00001 870 Gene3D - 681 854 - -
Stsc91170g00001 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91170g00001 Stsc-Chr91170 2531 12447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91170g00001 1 590 Receptor kinase-like Gene Family AT2G35620 47.627 3.31e-179 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Stsc91170g00001 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91170g00001 - - gmx:100783363 941.028