LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc91166g00005	ATGTTCACTTCAGAACCCGATCCCAATTTCACCGAGAAATCATGGCACCTCCTTTCCCTTCTTCTTCAAATCGGCCACCCCGTCCTCCCTCAACACCTCGCCTCCCGCTGCAACCTCTTCCCCACGTGCCCTAACTTCATCACGCACGTGACTTCAATCCCTCACTCTCCGATCCGCCTCAATGCTAACGGACTCGTCACGCCTTCTGACACCGCCGTTTACGCCCTTGGCAGGTTCCTAACGGTTTCCATTGACCGCCGGTTTCTGTTTTGGAACATTCCAGAATGTTCCGGCTGGTCCAAGAAACGGAAGGTGGATGCAGATTTGGTTAACTTTCCTGCTGCTAAGAGGAGGTTGTCTTTCACTTCTGCTGGAGTGGTTGAAAGAGATCAAAGGAGATTAACAGTTGGTGATGGGGCTCTAGAAATATCTTTGGAGAGTTATGCGCATGATGCAAAGACTATGATGGGTAGGAACATCCCTGCATTGAAGTTTGAATCAGAAATTATTAATATTGAGGATTCTATTATCCCTTTGCACATTGTTAAAAATGGCGAGTGTTTTGATTGTCCGGCACCAAATTTTGAATATTGTGTGACTGATAATGATACCAGCAAAATCATGTTCCGAGCAGAGGTTTCTGGTCCTGCAACTAAAGCTAGTGATAGTTTGTTCATAACCAGAAATGACTTAGATTGTAAGAAGGCGGCAGGTACAGATTCATTCATGCAATCTAATCTCTCTGTCAACCAGGCTCAGCCAACTGGTTTCCAAGATACCTTACTTTGCAATGAAACTCTTGTTGGTAACATTGATTTGGGAAATAACATGGACAACTTTGACACCTTACTTTGCAATGAAACTCTTGTTGGTAACATTGATTTGGGAAATAAAATGGACAACTTTGACGCACTAGGGAGTGAATTGCCTGAGCAAAATAATATTGATACTGCAGATGATATTTGGAAAACTAATACATGCAAAGATCCAATAAGAGAATCAAAGAATGAATATGGAGAAGGCTTGCGAGTGGAAATTGATCTAAATAAAGAGGCGATTGATTCTGGCATGGAGCAAGAGAAGGAAGATGTCTTTGAGAGGGCCCATATTGCACTAGTTGCAGAAGAACTTAAAAATGATGTGGAACCAGAAAATCATCTATCTTTGTTTGATTTGGACAACAAAGAGTGTACAGTGAGAAACATGGGGACTTCAACTCCAAAGCAGATTCAAAAATCTCCTTCCATATCAAAGGAAGGACAGAGGAATGATTTGCAACCAAATTTACAAGTCCTCACACAGTCACTAGCCTGTAACATATCTAATAAATCCCCAGAAGATGTTGATCAATGTAGAAATGAAGAGACTAAGAAATGTCTTCTGAAGTACAAACGAAAGCAAAGCCACAAAGAGAACCTAGTAGAAACTATCTCCACGACTCCTAAGGTGGAGAAAAAAGCACATCCATCTTTTGAAGCCTTTACAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGAACTGTTTACCGTGCCTGGAGAAAGGCTGATGGAAAAAAACTTGCAATAAAATGTCCGCATGATAATGCTCATAAAAACCATATAAATAATGAGCGGAGTATGCTTGAGCGTTTTGGGGGTAAAAGCTTCATAATAAAGTTTGAAGGTTCTTTCAAAAGTGGCAGCAATGACTGCTTTGTTTTGGAACATGTTGAGCATGATAGACCTGAGGTTTTGAAAAGAGAAATTGACATACTTCAGCTTCAGTGGTATGCATATTGCTTGTTCAGAGCCCTTGCCTGTTTACACAAAGAGGGAGTTGTTCATAGAGATGTTAAACCTGGAAACTTCCTCTTCTCTCGAAAGCTAAGCAAGGGCTACCTCATTGATTTCAACCTTGCTATGGATATAAAGCAGAAGTACAACAATGGAAGTAAATCAAAACTGGGCCTCAATACATCAAACAATGCGCCTGCACCATCTGGTTCTCGCCCATTGGCCCATGAAAAGAACATTGGAGGAAGGAATTCCATGACATACAACAAAAGGGAATTGGCAGATTATAAGAAAAATCCTGAACTTATTAATAGGCATGCAAAGCTGAATGCTTATGCTGGTTCTCTGAAAAATTGTCCTGACAAAACTGGTGGAAATTTACTCAGAGCACAAGGAACAGAGGGCTCAGGTATAACCTCGGCAAAAGATTTAACCAGCACTAGGACTGCTTCTGCAGAAAGGCTCAGGGAGCCCCTGCCTACCCAAGGAAGAAAGGGGCTTATCAGTTTTCTTCATAATTCTGTGCAATCTGCAAGCAATAGCTCCATTAAAGGTCCTTCTTCCCAAAGGAAAAGAGTAACTGCCCCTTCAGGCAAGGTAGATGGCAAGATGGTTTATCTTACACCGATGCCTTTACATTCATCTGTTGCTGCTGGCCTATTGAGAAGCAAAGGAGATGGAAAACTCAAAAGAGAAGGCTCATGTGTAGGTACTAAGGGATTCCGTGCTCCTGAGGTTTTGCTTAAGTCTCAGTTTCAGGGAACAAAGGTTGACATTTGGTCAGCTGGAGTCACTTTGCTTTACATGGTGATTGGGAGGACTCCTTTCACTGGCGATCCTGAACAGAATATGAAAGAGATTGCTAAGTTACGGGGCAGTGAAGAGCTTTGGGAAGTTGCCAAGCTACATGACCGAGAAGTATCTTTTCCAATGGAGTTACTAGATGAACGGTACTTGCAAGCATGGGACATAGAAAACTGGTGCAAGCTCAACACAAGGAGACCTGAGTTTCATGAAAACATCCCCAAATCATTGTTTGATCTAATAGACAAGTGTCTAACAGTGAATCCAAGAAGTAGGATCAGTGTTGAAGAAGCTCTAAGGCATGAGTTCTTTGCAACATGCAATGAGAGAATGAGAAAGGGAAGGATGATCAGAAGAGGTATCAGCTCAGATACTGCAGCTTCAAGCTCATTGTGA	2973	0.4205	MFTSEPDPNFTEKSWHLLSLLLQIGHPVLPQHLASRCNLFPTCPNFITHVTSIPHSPIRLNANGLVTPSDTAVYALGRFLTVSIDRRFLFWNIPECSGWSKKRKVDADLVNFPAAKRRLSFTSAGVVERDQRRLTVGDGALEISLESYAHDAKTMMGRNIPALKFESEIINIEDSIIPLHIVKNGECFDCPAPNFEYCVTDNDTSKIMFRAEVSGPATKASDSLFITRNDLDCKKAAGTDSFMQSNLSVNQAQPTGFQDTLLCNETLVGNIDLGNNMDNFDTLLCNETLVGNIDLGNKMDNFDALGSELPEQNNIDTADDIWKTNTCKDPIRESKNEYGEGLRVEIDLNKEAIDSGMEQEKEDVFERAHIALVAEELKNDVEPENHLSLFDLDNKECTVRNMGTSTPKQIQKSPSISKEGQRNDLQPNLQVLTQSLACNISNKSPEDVDQCRNEETKKCLLKYKRKQSHKENLVETISTTPKVEKKAHPSFEAFTIEEEEGSGGYGTVYRAWRKADGKKLAIKCPHDNAHKNHINNERSMLERFGGKSFIIKFEGSFKSGSNDCFVLEHVEHDRPEVLKREIDILQLQWYAYCLFRALACLHKEGVVHRDVKPGNFLFSRKLSKGYLIDFNLAMDIKQKYNNGSKSKLGLNTSNNAPAPSGSRPLAHEKNIGGRNSMTYNKRELADYKKNPELINRHAKLNAYAGSLKNCPDKTGGNLLRAQGTEGSGITSAKDLTSTRTASAERLREPLPTQGRKGLISFLHNSVQSASNSSIKGPSSQRKRVTAPSGKVDGKMVYLTPMPLHSSVAAGLLRSKGDGKLKREGSCVGTKGFRAPEVLLKSQFQGTKVDIWSAGVTLLYMVIGRTPFTGDPEQNMKEIAKLRGSEELWEVAKLHDREVSFPMELLDERYLQAWDIENWCKLNTRRPEFHENIPKSLFDLIDKCLTVNPRSRISVEEALRHEFFATCNERMRKGRMIRRGISSDTAASSSL	990

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc91166g00005	990	MobiDBLite	consensus disorder prediction	720	743	-	-
	Stsc91166g00005	990	SMART	serkin_6	494	963	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91166g00005	990	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	606	618	IPR008271	GO:0004672\|GO:0006468
	Stsc91166g00005	990	MobiDBLite	consensus disorder prediction	769	788	-	-
	Stsc91166g00005	990	MobiDBLite	consensus disorder prediction	715	754	-	-
	Stsc91166g00005	990	Pfam	Protein kinase domain	825	963	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91166g00005	990	Pfam	Protein kinase domain	496	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91166g00005	990	MobiDBLite	consensus disorder prediction	646	677	-	-
	Stsc91166g00005	990	PANTHER	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	446	970	-	-
	Stsc91166g00005	990	Gene3D	Transferase(Phosphotransferase) domain 1	458	652	-	-
	Stsc91166g00005	990	MobiDBLite	consensus disorder prediction	769	785	-	-
	Stsc91166g00005	990	FunFam	Probable serine/threonine-protein kinase DDB_G0291918	486	651	-	-
	Stsc91166g00005	990	ProSiteProfiles	Protein kinase domain profile.	494	963	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc91166g00005	990	MobiDBLite	consensus disorder prediction	646	660	-	-
	Stsc91166g00005	990	SUPERFAMILY	Protein kinase-like (PK-like)	477	967	IPR011009	-
	Stsc91166g00005	990	Gene3D	Transferase(Phosphotransferase) domain 1	808	982	-	-
	Stsc91166g00005	990	FunFam	Kinase like protein	803	974	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc91166g00005	Stsc-Chr91166	22831	28955	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc91166g00005	827	963	Core Cell Cycle Gene Families	AT3G48750	32.639	1.24e-10	62.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Stsc91166g00005		Pkinase	7.9e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc91166g00005	K02214		-	gmx:100795742	1024.62