Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91153g00003 ATGGTGTATTGTGATCACTGTGTTATAAATGTTAGTTCGTTTATATCTGATTCTGGTTCTGTATGTTGTAGCCAATGTGGTAAGGTGTTGCAAGATTGTCTTTTTTCTGAAGAGGCCACATTTGTTAAAAATTCAGCTGGGCAGAGTCAACTATCCGGCCATTATGTCAGAACAATTGAAAGTGAATTCTCTGCCTCACGTCAAAGGACTATAGATAGAGTTTTTCAGGAGATCAAATACTTAAGCTATAGCCTTGGAGTGCATGATGATAATATGACCTTGCAAGCTGTGGCCTTTTATAGAATAGCACTTGAGCGGAATTTCACCCGGGGACGAAAATCAGAGCAAGTGCAGGCTGCTTGTCTTTATATTGCATTTAGGGAAAATAATAAGCCATACCTTCTCATTGATTTTTCTAATCATTTAAGGATAAATGTTTATGTTCTAGGTGCTGTTTTTTTACAGCTGTGTAAAGTATTAAGGCTTGAAGAGCACCCAATTGTTCAGAAGCCTGTTGATCCCAGTCTTTTTATTTATAAATACACAAATAATTTGTTAAAGGAAAGGAATTTGGTTGTCTCTGAAACTGCACTGAGTATTATTGCTAGTATGAAACGTGACTGGATGCAGACAGGGAGAAAGCCAAGCGGATTATGTGGTGCAGCATTATATATGTCTGCTCTTGCGAATGGTTTTAAGTGCTCTAAGTCAGACATTCTAAGAATCGTCCATATATGTGAAGCAACTTTGACCAAGCGGTTGGTTGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAGCAGCCAATTAAAGTACCAAAGGGTGATTTGAACCAATGTACTTCCGAAGATCTACTATGTGAGCACAAGGGTACTGCTGTGCCTTATTTTGCACTTGGATTGTGTGAAGCATGTTACAAGGATTTTGATAAACTCTCTGGTGGACTTGGTGGAGGTTTGGATCCTCCTGCTTTCCAGCGTGCTGAGAGGGAGAGAACGAGAAAATCAGATTCTGAGGAAAGTGCTAACGAAACAGATGATATGGTGAAAGAATCAAATGGTGAACGTGGAAGCCGAAAAGAGGGATTACATGCCTCTGAGCCAAAAAGTGTTGGAGATAACTATGAGCACACAGCCACTAAAGATGGTGACCTTGACGAATCACACGAAGATGATATGAAGACTAAAACTAATGATGAATCAGAAAGTCTATCTGATATTGATGATCTAGAGGTTGATAGCTACCTTCACAATGAGGAGGAAAAACATTACAAGAAGATTATATGGGAAAATATGAATCGAGAATATCTTGAGGAACAAGCAGCTAAGGAAGCAGCTGCTGCAGCTGCTAAGAGATTTGCAGATGCAAATTGTTCCGAAGAGGAGCTGGCAGCAAGAGAGTTTGCAAAATCAGCTGCTGATGCTGTGGCAAAGTCCAGAAAGGAAATGAAAGAAAAACGAGCTCAAGAGGCAAAAAATTCCGGTCCTGCTCAATCTGCTGTAGAGGCCACCCGGCAGATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCTTGGAAAAGCTATTTGGTGATCCTGTGTCTATGGAGAAAGAGAATCCGAAGAAAGTACGATTCGACCCATCTCTGGACGAGCATGAAAATACTGAATCCAAATTAGAGGAAAATCTAAAGGATGCTGATGATGCAGTAGGAACAGAGGATGATGAAATTGAGGATGGTGATGATATGACTGGAGAATATGAAGATAATATGTATCATGAAAATGGAGGAGAGGCATATGAAGATGAATATAATGACGATGATGATTATTGA 1860 0.3989 MVYCDHCVINVSSFISDSGSVCCSQCGKVLQDCLFSEEATFVKNSAGQSQLSGHYVRTIESEFSASRQRTIDRVFQEIKYLSYSLGVHDDNMTLQAVAFYRIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNHLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKERNLVVSETALSIIASMKRDWMQTGRKPSGLCGAALYMSALANGFKCSKSDILRIVHICEATLTKRLVEFENTESASLTIEELNTMAKEHEKQPIKVPKGDLNQCTSEDLLCEHKGTAVPYFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERTRKSDSEESANETDDMVKESNGERGSRKEGLHASEPKSVGDNYEHTATKDGDLDESHEDDMKTKTNDESESLSDIDDLEVDSYLHNEEEKHYKKIIWENMNREYLEEQAAKEAAAAAAKRFADANCSEEELAAREFAKSAADAVAKSRKEMKEKRAQEAKNSGPAQSAVEATRQMLRTKRLSSKVNYDRLEKLFGDPVSMEKENPKKVRFDPSLDEHENTESKLEENLKDADDAVGTEDDEIEDGDDMTGEYEDNMYHENGGEAYEDEYNDDDDY 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91153g00003 619 MobiDBLite consensus disorder prediction 490 515 - -
Stsc91153g00003 619 FunFam Cyclin/Brf1-like TBP-binding protein 409 459 - -
Stsc91153g00003 619 SMART cyclin_7 176 259 IPR013763 -
Stsc91153g00003 619 SMART cyclin_7 76 158 IPR013763 -
Stsc91153g00003 619 SUPERFAMILY Cyclin-like 75 163 IPR036915 -
Stsc91153g00003 619 MobiDBLite consensus disorder prediction 541 575 - -
Stsc91153g00003 619 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Stsc91153g00003 619 Coils Coil 260 280 - -
Stsc91153g00003 619 MobiDBLite consensus disorder prediction 337 415 - -
Stsc91153g00003 619 Coils Coil 481 501 - -
Stsc91153g00003 619 Pfam Brf1-like TBP-binding domain 417 538 IPR011665 -
Stsc91153g00003 619 Pfam Transcription factor TFIIB repeat 73 157 IPR013150 GO:0017025
Stsc91153g00003 619 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Stsc91153g00003 619 FunFam Transcription factor IIIB subunit 173 262 - -
Stsc91153g00003 619 Coils Coil 558 578 - -
Stsc91153g00003 619 MobiDBLite consensus disorder prediction 329 424 - -
Stsc91153g00003 619 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Stsc91153g00003 619 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Stsc91153g00003 619 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Stsc91153g00003 619 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 529 IPR000812 GO:0006352|GO:0070897
Stsc91153g00003 619 MobiDBLite consensus disorder prediction 576 594 - -
Stsc91153g00003 619 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Stsc91153g00003 619 Gene3D - 64 165 - -
Stsc91153g00003 619 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Stsc91153g00003 619 MobiDBLite consensus disorder prediction 541 619 - -
Stsc91153g00003 619 Gene3D Single helix bin 408 459 - -
Stsc91153g00003 619 Gene3D - 173 265 - -
Stsc91153g00003 619 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91153g00003 Stsc-Chr91153 15107 23703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91153g00003 1 523 Inorganic Solute Cotransporters AT2G01280 39.098 7.29e-102 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91153g00003 K15196 - gmx:100817609 719.539