Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91148g00006 ATGGAAATGGAATCCATCAGCCACCAAGAAGAAGAAGAAGAAGAGGAAACGACGGATCGAAGATGGTATGAGTGTGTGTTCTGCAAGAGAGGCTTCACAACTGCACAAGCCTTGGGCGGACACATGAATATTCATAGAAAGGACAAGGCCCCCAATAACAAAACAAAACCTAATTCTACTGCTTCTTCTCTCACTTCTTCAACTAAAGTTGAACAACATCATCATCTCGCCGCCTTCTATTACTTCTCATCATCATCAATTCCAACAGCCCTTGGAGGGAATAATAATCACTATGAGGTTGATTATTCTCATTCATCTTCTTCTTCTTCCAATCACCACCACAACCTTCAAGGTTACTTTCCTCCACCCAAGGAGAGAAATTTCAGTTTTTATAATCATAATAATTTTGATAATTCATCATCATCATCATCATGTGTTGGTGACGTTAAAGACAATAAGGTGCAAGTAGAAGATAATACTGATGAAGGTGGCAGTGCCCTTGATTTAGAGCTCAGACTTGGTCATCATCATCCTTAA 537 0.3966 MEMESISHQEEEEEEETTDRRWYECVFCKRGFTTAQALGGHMNIHRKDKAPNNKTKPNSTASSLTSSTKVEQHHHLAAFYYFSSSSIPTALGGNNNHYEVDYSHSSSSSSNHHHNLQGYFPPPKERNFSFYNHNNFDNSSSSSSCVGDVKDNKVQVEDNTDEGGSALDLELRLGHHHP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91148g00006 178 Pfam C2H2-type zinc finger 23 47 - -
Stsc91148g00006 178 MobiDBLite consensus disorder prediction 139 178 - -
Stsc91148g00006 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Stsc91148g00006 178 PANTHER OS07G0101800 PROTEIN 8 176 - -
Stsc91148g00006 178 Gene3D Classic Zinc Finger 4 78 - -
Stsc91148g00006 178 MobiDBLite consensus disorder prediction 39 68 - -
Stsc91148g00006 178 MobiDBLite consensus disorder prediction 54 68 - -
Stsc91148g00006 178 SUPERFAMILY beta-beta-alpha zinc fingers 18 50 IPR036236 -
Stsc91148g00006 178 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Stsc91148g00006 178 MobiDBLite consensus disorder prediction 102 116 - -
Stsc91148g00006 178 MobiDBLite consensus disorder prediction 102 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91148g00006 Stsc-Chr91148 28107 28643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91148g00006 22 68 C2H2 Transcription Factor Family AT5G43540 61.702 1.07e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc91148g00006 zf-C2H2_6 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91148g00006 - - aip:107647878 153.68