Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91148g00001 ATGAATGGTGAAACAGAAGCAATACGTGTAGCTCCATGTCTGGATTTTAAGGAGATAGTGTATTTTGTTCTTAGTTTTGTTAGAAAGATGGCAGCTTTGATGTCAGCTAGGTTTCTTCTTGTTGCTGGAGAGTTCATTCCCATTAGAAGGGCATTGGCAACTCATAGAAATGCTTCTTCTTTGTTGCACACGAGTGTTCATTGCATGAGCCAAGTGGAACCACCCAATCATGGTTCCTTAACCCTCTCGAGTATTGGTTTCCAAAGCGAACTTGATAAACCAATAAACAAAGATGACAAGTCTTCTGGTAAGGTAAAGTCATTGCTGGGTTCATCCCGTGGGTCCCTCAAGGGAAAAGGAATAGGGAAACCTATTGGTTCCAGTGAAAAGAATAAAGCAGTTGGGGTTGTTGAGAGGAAGAAACAGCAAATTGAGGCTGCCCCGTTTGCAGTGAAATCGTTCTCAGAACTTGGGCTGCCCCTTGCTCTGATTGAGAGACTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGTGGCTGTTCCTACCATTCTGCAAAACCATGATGTTGTAATTCAGTCTTACACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCGGCTATTGGCCCATTGAGGAACAAAGTTTCCAAGAGTGACGGCGGTGGTGATTCTGGTAGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAAGATTCTAGGAGTGGAGAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGCGCCAACCGAACTAGGCAGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGGATAGCAGAGCTTAGCACAGCAGGGAAACTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTCGATGAGCTCTTGTCATTCAATTTTCGGGAAGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCTGACCCGGATCCAAATGTTAAAAGGAATGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCTAGGAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCAACTTGATACTGTCTTGCCTCCAAGGCCTATCAATTTGTCAAGACCTTCAATTGGTTCCACTGCAGACCCAAATATGCCATCTCAGGCATCAACAGAAAGTTTGCCTCCGGCATTGAAACACTATTACTGTGTAGCAAGGTTACAACACAAAGTAGATACCATGAGAAAGTGTATTCATGCTCTGGATGCAAAAATTGTAATAGCTTTCATGAACAACTCTAAGCAACTAAAGGATGTCGTCTTTAAGCTGGAGGCCCGTGGTATGAAAGCGGAGGAGTTGCATGGAGATCTTGGGAAGCTTGCTAGGTCAACAACTCTGAAGAAATTCAAGAATGGTGAGGTGAGAGTTTTGGTGACAAATGAATTATCAGCTAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGGACGGTACAGTGCTAACCATATGTGAAGAATCCGAAGTTTTTGTTGTGAGGAAAATGGAGAAGCAGCTTGGAGTAACTGTAGCATTCTGTGATTTTGTTGAGGGAAAGATGCTTGTCAAGGAAGAAGATAAAGCACTCAGCACTTCCAGAAAATGA 1803 0.4493 MNGETEAIRVAPCLDFKEIVYFVLSFVRKMAALMSARFLLVAGEFIPIRRALATHRNASSLLHTSVHCMSQVEPPNHGSLTLSSIGFQSELDKPINKDDKSSGKVKSLLGSSRGSLKGKGIGKPIGSSEKNKAVGVVERKKQQIEAAPFAVKSFSELGLPLALIERLEKEGFSVPTEVQSVAVPTILQNHDVVIQSYTGSGKTLAYLLPILSAIGPLRNKVSKSDGGGDSGRKMGIEAVVVAPSRELGMQIVREFEKILGVENKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSTAGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPDPNVKRNERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIQLDTVLPPRPINLSRPSIGSTADPNMPSQASTESLPPALKHYYCVARLQHKVDTMRKCIHALDAKIVIAFMNNSKQLKDVVFKLEARGMKAEELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFVVRKMEKQLGVTVAFCDFVEGKMLVKEEDKALSTSRK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91148g00001 600 SMART ultradead3 171 401 IPR014001 -
Stsc91148g00001 600 CDD SF2_C_DEAD 428 557 - -
Stsc91148g00001 600 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 55 585 - -
Stsc91148g00001 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 443 587 IPR001650 -
Stsc91148g00001 600 Pfam DEAD/DEAH box helicase 176 369 IPR011545 GO:0003676|GO:0005524
Stsc91148g00001 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Stsc91148g00001 600 Gene3D - 425 581 IPR027417 -
Stsc91148g00001 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 383 IPR014001 -
Stsc91148g00001 600 SMART helicmild6 467 548 IPR001650 -
Stsc91148g00001 600 Pfam Helicase conserved C-terminal domain 449 548 IPR001650 -
Stsc91148g00001 600 CDD DEADc 163 384 - -
Stsc91148g00001 600 MobiDBLite consensus disorder prediction 93 122 - -
Stsc91148g00001 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 570 IPR027417 -
Stsc91148g00001 600 Gene3D - 126 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91148g00001 Stsc-Chr91148 6072 8232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91148g00001 151 576 Eukaryotic Initiation Factors Gene Family AT3G19760 24.356 2.65e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91148g00001 - - aip:107613119 979.163