Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91145g00003 ATGGGGAGGAAGAAGCCCACGGCACGCGACGATGATAACGTTCCTGCTGCATCACAAGGCGGCGGTAAATCTAAGAAGAAGGTAGTCATCGACGATGACGAGTATGCCATCGGACCTGACCTCACCGAGGAGCCGCAGGAGGAGAAGAAGCAGGCGGCACCACCAGCTGGCAAGAAGAAGGGTAAAAAGGGTAATGCCAAAGCTAAGGCAAAGGGTAAGGATGACGAAGATGATGACGATGATGTGGTAATTGGTGCGCCTGGGGACGATGATGATGATGAGGATGCTGGGATTGTGTTTGCTGGGAAGAAGAAGAAGGGTAAATCTAAGAAAGGTGGTGGTGGCAGTGTGTTCGCTGCTGCATCTGGTTTTGGCTTGCTTGGGGATGAGGGTGATGATGGCGGTGAAGATGATGATAAATCTGGGATAACTGGTGATGGCGGCGATGCTGCTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGAGGACGAAGAGCCTGTGGTTAGTTTTACAGGTAAGAAGAAGCCCTCTAAGGGCTCGAAAAAAGGTGGTGGCAGTGTGTTCAGTGCCTCAGCTTTTGATGCTATTGATGATGCTGATAATGATGGTGAGGAGGAGGATGAGCCAGTGGTAAGTTTTTCGGGTAAGAAGAAACCCTCAAAGGGATCGAAGAAAGGTAGTTCATTCTCTGCCTCGGCCTTTGATGCTATTGATGATGGTGAGGAGGTGGTGGATAATGGCGGAGATGAGGATGAGCCAGTTATTGCTTTTACCGGGAAGAAGAAGTCTTCTAAAGGTGGCAAGAAGGGTGGTGGTGCTGCATTTTCAGCAGCTAGTTTTGACGACGGGGAGGAGGCTCAGAATGAAAAGGAGGAAGAAGAGGATGTTGAGGACATGGCAATTACCTTCTCTGGTAAGAAAAAGAAGTCATCAAAGTCTTCTAAGAAGGCTTCATTTAGTACAGCTTTTGCCGATGAAGAAGATGCTTCTGTAGCTGAGTCTGATAGAGATGGTGAGGATGAAGACGAGGTTTTGGTTGCGTTTTCGGGTAAGAAGAAGTCTTCTAAAAAGAAAAGCAGTGCTAAAACGGGTGATGAAACTGTTGAGCCTGAACAACCTAGTGCTGGAATTAGCAATGCAGATGCTGACAAAAATGTAAATAAAAGTGAAGGAGTCACTGAAACCTCGAAAAATAAGAAGAAGAAGAAAAACAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTAGATGCGATTCTTGCGGAGCTTGGTGAGGGCCCTCCAATATCTAAACCTTCTGCCCCTCAACCCCAGGATGATAAAGTTAAGCAGGATGATAAAGCTCAGCCTGTTTCTGAACCAGGCCCTGCTACTGATGCTGCAGGCGAAAAGGAGGGGGAAGAGGAGACAGTAGAGTCAGCTGCTGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCTGCAGCTGCTGCAGCCGCTGGAACTTTAGTAGAAAATGAAGCTAAAGAAGTTAAGGCCGAGCCTGCTGAAGCTAAGAAGAATGACTCAAAGGCCAAAGCAGTTGACAACAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAGGCATTAGCTCGAAGGAAGGAGGCCGAAGAAAGGCAGAAGAAGGAAGAGGAGGAGAGGTTGAGGAAGGAGGAGGAGGAGCGACGTAGGCAGGAGGAACTTGAGAGACAGGCTGAAGAAGCTAGACGCAGGAAAAAGGAAAAAGAAAAGGAGAAGCTCCAGAGAAAGAAGCAAGAAGGTAAACTGCTAACTGGTAAGCAAAAAGAGGAAGCTCGCCGCCTGGAGTTAATGAGAAAGCAGTTTCTTAATAGCACAGGAGGTGCAAATCTCCCTGGTGGGGACTCTGGTCCACCAGCCAAAAGGCCTATATATCAGACAAAGAAGTCGAAACCCACCCATCATCAGCAGAATGGTGCTGCTGTCTCCACAGCTGCTGCCGCCGTTGAGATGGCTGAAAGTGTTGAAGCAAAGGAAAATCAGGAGACAGCCACTGATGCAGGTTCAGATGAACAAGAAAAGGTTGAAGAAACTGTAGTGGAGCAGGTGGAGGAGAAAGTTGAACCTCCAGAAGCTGCTGAAGACAATGGAGAAGATGAGGATGATGATGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAGGGTGCATTTGCTGATGAAGATTCTGAGCCCGAACCGATTGCCAAAAAGGAGACAAAGACTGCTGTAACCATGAACAATGCTGCTGCTACAAAGAAAACTATTTCTAAGCCCGTGACCGAAGAAATTGTAGATAGAAAGCTTGTTGCTGACAAGAATAACTCAGAACCACCAAAATCTGCTTTGCCAAGGGAACCTGCAAAGCCAAAGGAAACACAGAAGTCTTCTGTGCCTCCTAAGCCAACTGAAGAGAACCTCCGTTCTCCAATTTGCTGTATCATGGGGCATGTGGATACAGGTAAAACTAAGCTTCTAGATTGCATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGTATCACACAGCAGATTGGTGCAACATACTTCCCTGCGGACAACATACGTGAAAGAACTAAGGAATTGAAAGCTGATGCAAAGCTAAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGGCACGAATCGTTTACTAACCTAAGGTCTCGGGGTTCAGGGCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAGACAATTGAATCCCTCAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGAAATGCTCCAATTATCAAAGCGATGAAACAACAAACCAAGGACGTTCAAAATGAGTTCAATATGAGGCTCGTTCAGATTATTACGCAACTGAAGGAACAGGGGCTAAATACTGAGTTGTATTATAAAAACAAGGAAATGGGAGAAACGTACAACATTGTACCTACAAGTGCAATAAGTGGTGAAGGAATCCCTGATTTGTTATTGTTGTTGGTTCAATGGACCCAAAAAACGATGGCTGATAAACTTACTTACAGTGATGAAGTGCAGTGTACTGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGACCAAATAGTTGTCTGTGGAATGCAGGGGCCAATTGTGACGACAATTCGAGCTTTACTCACACCACATCCAATGAAGGAGCTCCGTGTTAAGGGTACATTTCTCCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAGATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGAACTGGTTTATATGTTGTGAAGCCTGATGATGATTTGGAAGATATTAAAGAATCTGCAATGGAAGATATGCGATCAGTCATGAGCAGGATTGACAGGAGTGGTGAGGGAGTTTGTGTGCAGGCATCTACCCTTGGTTCATTGGAAGCATTGCTGGAGTTTTTGAAAACACCAGAAGTGAATATTCCTGTTAGTGGTATAAGCATTGGCCCTGTGCATAAGAAGGATGTTATGAAGGCAAGCGTAATGCTTGAAAAGAAGCGAGAATATGCTGCTATATTGGCATTTGATGTCAAAGTCACTCCTGAGGCTAGGGACCTTGCAGAAGAACTGGGTGTGAAAATCTTCATCGCTGATATCATTTATCATTTGTTTGATCAATTTAAGGCCTATATCGATAACATTAAGGAGGAGAAAAAGAAGGAATCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATTTTACCAAACTGTGTTTTCA 3889 0.4518 MGRKKPTARDDDNVPAASQGGGKSKKKVVIDDDEYAIGPDLTEEPQEEKKQAAPPAGKKKGKKGNAKAKAKGKDDEDDDDDVVIGAPGDDDDDEDAGIVFAGKKKKGKSKKGGGGSVFAAASGFGLLGDEGDDGGEDDDKSGITGDGGDAAEEEEEEEEEEDEDEEPVVSFTGKKKPSKGSKKGGGSVFSASAFDAIDDADNDGEEEDEPVVSFSGKKKPSKGSKKGSSFSASAFDAIDDGEEVVDNGGDEDEPVIAFTGKKKSSKGGKKGGGAAFSAASFDDGEEAQNEKEEEEDVEDMAITFSGKKKKSSKSSKKASFSTAFADEEDASVAESDRDGEDEDEVLVAFSGKKKSSKKKSSAKTGDETVEPEQPSAGISNADADKNVNKSEGVTETSKNKKKKKNKSGRTAQEEEDLDAILAELGEGPPISKPSAPQPQDDKVKQDDKAQPVSEPGPATDAAGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAAGTLVENEAKEVKAEPAEAKKNDSKAKAVDNKKVPKHVREMQEALARRKEAEERQKKEEEERLRKEEEERRRQEELERQAEEARRRKKEKEKEKLQRKKQEGKLLTGKQKEEARRLELMRKQFLNSTGGANLPGGDSGPPAKRPIYQTKKSKPTHHQQNGAAVSTAAAAVEMAESVEAKENQETATDAGSDEQEKVEETVVEQVEEKVEPPEAAEDNGEDEDDDEDEWDAKSWDDVNLNAKGAFADEDSEPEPIAKKETKTAVTMNNAAATKKTISKPVTEEIVDRKLVADKNNSEPPKSALPREPAKPKETQKSSVPPKPTEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPADNIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIIKAMKQQTKDVQNEFNMRLVQIITQLKEQGLNTELYYKNKEMGETYNIVPTSAISGEGIPDLLLLLVQWTQKTMADKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTFLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDIKESAMEDMRSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARDLAEELGVKIFIADIIYHLFDQFKAYIDNIKEEKKKESADEAVFPCVLKILPNCVF 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 709 728 - -
Stsc91145g00003 1296 Pfam Elongation factor Tu GTP binding domain 827 1035 IPR000795 GO:0003924|GO:0005525
Stsc91145g00003 1296 Coils Coil 531 602 - -
Stsc91145g00003 1296 CDD aeIF5B_II 1047 1157 - -
Stsc91145g00003 1296 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 511 1296 IPR015760 -
Stsc91145g00003 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 1114 IPR027417 -
Stsc91145g00003 1296 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1148 1277 IPR036925 -
Stsc91145g00003 1296 FunFam Eukaryotic translation initiation factor 5B 817 1045 - -
Stsc91145g00003 1296 Coils Coil 465 497 - -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 505 616 - -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 329 343 - -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 673 708 - -
Stsc91145g00003 1296 FunFam Eukaryotic translation initiation factor 5B 1165 1271 - -
Stsc91145g00003 1296 Gene3D - 818 1045 IPR027417 -
Stsc91145g00003 1296 Gene3D - 1167 1271 IPR036925 -
Stsc91145g00003 1296 Gene3D Translation factors 1046 1166 - -
Stsc91145g00003 1296 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 823 1039 IPR000795 GO:0003924|GO:0005525
Stsc91145g00003 1296 PRINTS GTP-binding elongation factor signature 907 918 IPR000795 GO:0003924|GO:0005525
Stsc91145g00003 1296 PRINTS GTP-binding elongation factor signature 827 840 IPR000795 GO:0003924|GO:0005525
Stsc91145g00003 1296 PRINTS GTP-binding elongation factor signature 891 901 IPR000795 GO:0003924|GO:0005525
Stsc91145g00003 1296 PRINTS GTP-binding elongation factor signature 943 952 IPR000795 GO:0003924|GO:0005525
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 77 96 - -
Stsc91145g00003 1296 FunFam eukaryotic translation initiation factor 5B 1046 1165 - -
Stsc91145g00003 1296 CDD IF2_eIF5B 826 1036 - -
Stsc91145g00003 1296 NCBIfam small GTP-binding protein domain 828 976 IPR005225 GO:0005525
Stsc91145g00003 1296 Pfam Elongation factor Tu domain 2 1062 1137 IPR004161 GO:0005525
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 148 167 - -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 784 823 - -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 373 387 - -
Stsc91145g00003 1296 Pfam Translation-initiation factor 2 1151 1264 IPR023115 -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 461 480 - -
Stsc91145g00003 1296 MobiDBLite consensus disorder prediction 1 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91145g00003 Stsc-Chr91145 32421 38099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91145g00003 248 1296 Eukaryotic Initiation Factors Gene Family AT1G76810 64.405 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91145g00003 K03243 - gmx:100814875 1297.72